From 160458e8183fc348c792c625ce831f0ef514bbc0 Mon Sep 17 00:00:00 2001
From: promptadmin <your@email.com>
Date: Tue, 21 Jul 2026 15:49:25 +0000
Subject: [PATCH] [upstream-sync]
 skills/tooluniverse-antigravity-plugin/SKILL.md from
 mims-harvard/ToolUniverse@beea85fa [unknown]

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+---
+lineage_type: import
+upstream_source: https://github.com/mims-harvard/ToolUniverse/blob/beea85fa/skills/tooluniverse-antigravity-plugin/SKILL.md
+upstream_sha: beea85fa
+imported_at: 2026-07-21
+prompt_class: unknown
+upstream_changes: accepted
+name: tooluniverse-antigravity-plugin
+description: Install, set up, verify, update, pin, uninstall, or troubleshoot the ToolUniverse plugin on Google Antigravity (AGY / Antigravity IDE / Antigravity 2.0). ALWAYS consult this skill for any of those — don't answer from memory, because the exact CLI name (agy), the "agy plugin install <path>" flow, the uvx tooluniverse MCP server, and the API-key env vars are easy to get wrong. Use it whenever someone wants to get ToolUniverse (or "the 1000+ scientific tools" / "the harvard tools") working on Antigravity, says the Antigravity plugin or its tools/skills won't load, hits a uvx or MCP-server startup error, asks how Antigravity updates it, wants to pin or remove it, or finds it running an old tool version. Not for the Codex plugin (use tooluniverse-codex-plugin) or Claude Code plugin (use tooluniverse-claude-code-plugin), for running research with the tools, or for authoring new tools or skills.
+disable-model-invocation: true
+---
+
+# Install the ToolUniverse Plugin for Google Antigravity (AGY)
+
+One-step install on Google Antigravity (AGY / Antigravity IDE / Antigravity 2.0): an MCP server exposing 1000+ scientific tools plus 120+ research skills — all auto-configured.
+
+## Prerequisites (check once)
+
+```bash
+uv --version   # provides `uvx`; if missing: curl -LsSf https://astral.sh/uv/install.sh | sh
+agy --version  # Antigravity CLI; if missing: https://antigravity.google
+```
+
+## Install
+
+In Antigravity, plugins can be installed using the `agy` CLI:
+
+### Option 1: Direct path / imported plugin install (recommended)
+
+```bash
+# If installed via Claude Code / Codex marketplace cache or cloned repo:
+agy plugin install /path/to/ToolUniverse/plugin
+```
+
+### Option 2: Clone + install
+
+```bash
+git clone https://github.com/mims-harvard/ToolUniverse.git
+cd ToolUniverse
+agy plugin install ./plugin
+```
+
+Restart Antigravity. The MCP server auto-starts via `uvx tooluniverse` on first use (~30 s cold start while the package downloads, instant after).
+
+## Verify it worked
+
+```bash
+agy plugin list
+```
+
+Expect output showing `tooluniverse` under `imports`:
+
+```json
+{
+  "imports": [
+    {
+      "name": "tooluniverse",
+      "source": "claude-code",
+      "components": [
+        "skills",
+        "agents",
+        "mcpServers",
+        "hooks",
+        "commands"
+      ]
+    }
+  ]
+}
+```
+
+Inside Antigravity, just ask naturally:
+
+```
+What are the top mutated genes in breast cancer?
+Research the drug metformin.
+```
+
+The research skills auto-activate on matching questions, and the MCP tools are discovered and run via `find_tools` → `execute_tool` — no command prefix needed.
+
+## What you get
+
+| Component | What it does | How it's used |
+|---|---|---|
+| **MCP server** | 1000+ tools via `find_tools`, `get_tool_info`, `execute_tool` | Auto-loaded; no action needed |
+| **120+ skills** | Structured research workflows (drug discovery, variant interpretation, pharmacovigilance, phylogenetics, statistical modeling, etc.) | Auto-activate on matching questions |
+| **Research agent** | Autonomous multi-database research subagent | Auto-routed on complex research tasks |
+
+## API keys (optional, but recommended)
+
+Most tools work without keys. For higher rate limits or gated databases, set the keys you care about in `~/.gemini/config/plugins/tooluniverse/mcp_config.json` or pass them in environment variables:
+
+```bash
+export NCBI_API_KEY="your_key"
+export ONCOKB_API_TOKEN="your_token"
+export SEMANTIC_SCHOLAR_API_KEY="your_key"
+```
+
+## Update
+
+```bash
+uv cache clean tooluniverse
+```
+
+Restart Antigravity.
+
+## Troubleshooting
+
+| Symptom | Fix |
+|---|---|
+| `uvx: command not found` | Install `uv` (see Prerequisites), reopen terminal. |
+| MCP server won't start | Run `uv cache clean tooluniverse` or `uvx --refresh tooluniverse --help` in terminal. |
+| Plugin installs but tools missing | Restart Antigravity CLI/IDE. First launch downloads the package (~30 s). |
+| `requires-python >= 3.10` | `uv python install 3.12` |
+
+Still stuck: https://github.com/mims-harvard/ToolUniverse/issues
-- 
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