diff --git a/upstream/ai-boost-awesome-ai-for-science/catalogue/README.md b/upstream/ai-boost-awesome-ai-for-science/catalogue/README.md index 5bd41f2..25079a0 100644 --- a/upstream/ai-boost-awesome-ai-for-science/catalogue/README.md +++ b/upstream/ai-boost-awesome-ai-for-science/catalogue/README.md @@ -2,9 +2,9 @@ title: "Readme" task: "" lineage_type: import -upstream_source: https://github.com/ai-boost/awesome-ai-for-science/blob/34bc16f8/README.md -upstream_sha: 34bc16f8 -imported_at: 2026-08-08 +upstream_source: https://github.com/ai-boost/awesome-ai-for-science/blob/024f42bf/README.md +upstream_sha: 024f42bf +imported_at: 2026-08-09 prompt_class: catalogue upstream_changes: accepted author: upstream @@ -219,6 +219,7 @@ validated: false - [Science Superpowers (K-Dense-AI)](https://github.com/K-Dense-AI/science-superpowers) - Composable computational-science methodology skills for AI research agents emphasizing pre-registration, reproducible workspaces, and red-team review to guard against p-hacking and HARKing; zero third-party dependencies and runs with any agent harness plus a POSIX shell (281+ stars, MIT License, 2026) - [Wisp Science](https://github.com/xuzhougeng/wisp-science) - Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models (857+ stars, 2026) - [Academic Research Skills (ARS)](https://github.com/Imbad0202/academic-research-skills) - Comprehensive Claude Code skill suite covering the full academic pipeline from deep research and paper writing to multi-perspective peer review, revision, and finalization; features multi-agent teams, PRISMA systematic review, style calibration, claim-level citation audits, integrity gates, and human-in-the-loop safeguards (38K+ stars, CC BY-NC 4.0, 2026) +- [Qinyan Academic Skills](https://github.com/LeonChaoX/qinyan-academic-skills) - Curated, multilingual library of 182 installable AI agent skills for end-to-end academic research spanning literature discovery, scientific writing, grant development, bioinformatics, drug discovery, clinical research, machine learning, and data analysis (779+ stars, MIT License, 2026) - [SkillOpt (Microsoft, 2026)](https://github.com/microsoft/SkillOpt) - Text-space optimizer that treats agent skill documents as trainable parameters for frozen LLMs, using scored rollouts and held-out validation gates to iteratively improve reusable natural-language skills; includes SkillOpt-Sleep for nightly self-evolution and improves accuracy across Claude Code, Codex, Copilot, and direct-chat harnesses, making it a meta-tool for evolving scientific agent skill workflows (15.5K+ stars, MIT License, PyPI) - [Open Science (AIPOCH)](https://github.com/aipoch/open-science) - Open-source, local-first, model-agnostic AI research workbench for reproducible scientific discovery; runs Python/R notebooks, searches the web, calls scientific data connectors, and produces inspectable reports, tables, and figures in a self-hosted desktop workspace (1.5K+ stars, Apache 2.0, 2026) - [OmicsClaw](https://github.com/TianGzlab/OmicsClaw) - Local-first, conversational AI research partner for multi-omics analysis with CLI, desktop app, and 95+ reproducible skills; keeps raw data local while routing natural-language requests to Python/R/CLI tools with persistent memory, autonomous analysis paths, and multi-method consensus workflows (TianGzlab, 155+ stars, Apache 2.0, 2026) @@ -656,6 +657,7 @@ validated: false - [PathChat (Nature Medicine 2024)](https://github.com/MahmoodLab/PathChat) - Multimodal generative AI assistant for computational pathology enabling interactive visual-language conversations over histopathology images for diagnostic reasoning, case discussion, and education, built on a Mistral-7B backbone with domain-specific fine-tuning (Mahmood Lab, Harvard Medical School, 1.2K+ stars) - [SlideChat (CVPR 2025)](https://github.com/uni-medical/SlideChat) - First large vision-language assistant for gigapixel whole-slide pathology image understanding, released with the SlideInstruction dataset and SlideBench benchmark (uni-medical, Apache 2.0, 2025) - [HEST (NeurIPS 2024)](https://github.com/mahmoodlab/HEST) - Dataset and benchmarking framework integrating histology and spatial transcriptomics, enabling multimodal analysis of whole-slide images with matched spatial gene expression for advancing computational pathology and tissue microenvironment research (Mahmood Lab, Harvard Medical School, 411+ stars) +- [spmind (ICML 2026)](https://github.com/tomtommyyuan/spmind) - Autonomous AI agent for end-to-end spatial proteomics analysis, featuring SP-Bench for agentic multiplexed-imaging workflows (tomtommyyuan, 140+ stars, 2026) #### Medical AI & Clinical Applications - [Cellpose](https://github.com/MouseLand/cellpose) - Generalist deep learning algorithm for cell and nucleus segmentation across diverse image types, with human-in-the-loop training (2.0) and one-click image restoration (3.0), 70K+ training objects (Nature Methods 2021/2022/2025)