---
title: "Provenance-backed database and API enrichment batch."
task: ""
lineage_type: import
upstream_source: https://github.com/inoue0426/awesome-computational-biology/blob/7a064bf0/data/enrichment.database-api-v1.yml
upstream_sha: 7a064bf0
imported_at: 2026-08-08
prompt_class: catalogue
upstream_changes: accepted
author: upstream
validated: false
---

# Provenance-backed database and API enrichment batch.
resources:
  chembl_web_services:
    entities: [molecule, protein]
    modalities: [chemical-structure]
    documentation: https://www.ebi.ac.uk/chembl/api/data/docs
    last_checked: 2026-08-08
    metadata_sources:
      - https://www.ebi.ac.uk/chembl/api/data/docs

  clinicaltrials_gov_api:
    entities: [disease, drug]
    modalities: [clinical]
    documentation: https://clinicaltrials.gov/data-api/api
    last_checked: 2026-08-08
    metadata_sources:
      - https://clinicaltrials.gov/data-api/api

  ensembl_rest_api:
    entities: [gene, genome, transcript, variant]
    modalities: [genomics]
    documentation: https://rest.ensembl.org/
    last_checked: 2026-08-08
    metadata_sources:
      - https://rest.ensembl.org/

  kegg_rest_api:
    entities: [compound, gene, pathway]
    documentation: https://www.kegg.jp/kegg/rest/keggapi.html
    last_checked: 2026-08-08
    metadata_sources:
      - https://www.kegg.jp/kegg/rest/keggapi.html

  ncbi_e_utilities:
    entities: [gene, genome, protein, transcript, variant]
    modalities: [genomics, transcriptomics]
    documentation: https://www.ncbi.nlm.nih.gov/books/NBK25501/
    last_checked: 2026-08-08
    metadata_sources:
      - https://www.ncbi.nlm.nih.gov/books/NBK25501/

  open_targets_platform_api:
    entities: [disease, drug, gene, variant]
    modalities: [genomics, knowledge-graph]
    documentation: https://platform.opentargets.org/api
    last_checked: 2026-08-08
    metadata_sources:
      - https://platform.opentargets.org/api

  pubmed_e_utilities_esearch_efetch:
    documentation: https://www.ncbi.nlm.nih.gov/books/NBK25501/
    last_checked: 2026-08-08
    metadata_sources:
      - https://www.ncbi.nlm.nih.gov/books/NBK25501/

  uniprot_rest_api:
    entities: [protein]
    modalities: [protein-sequence, proteomics]
    documentation: https://www.uniprot.org/help/api
    last_checked: 2026-08-08
    metadata_sources:
      - https://www.uniprot.org/help/api

  drugbank:
    entities: [disease, drug, protein]
    modalities: [chemical-structure]
    last_checked: 2026-08-08
    metadata_sources:
      - https://go.drugbank.com/

  string:
    entities: [protein]
    modalities: [knowledge-graph, proteomics]
    documentation: https://string-db.org/help/api/
    last_checked: 2026-08-08
    metadata_sources:
      - https://string-db.org/
      - https://string-db.org/help/api/