[Upstream sync] K-Dense-AI/scientific-agent-skills (github) — 0 added, 137 modified #62

Merged

promptadmin merged 137 commits from upstream-sync/scientific-agent-skills-20260902-1e5eef-aehs into main

2026-09-04 15:27:20 +00:00

promptadmin commented

2026-09-02 17:26:48 +00:00

Owner

Upstream sync from `K-Dense-AI/scientific-agent-skills` (github)

Source: https://github.com/K-Dense-AI/scientific-agent-skills
Forge: github
Compare: 1dd0fccf...1e5eeffb

Scan summary

Category	Files
Prompt / Skill files	21
Catalogue / Reference files	116

Prompt files are stored under upstream/{owner}-{repo}/
Catalogue files are stored under upstream/{owner}-{repo}/catalogue/

Decision required

Option	Action
Accept	Merge this PR — changes ingested into PromptNotes
Reject	Close this PR — local version preserved unchanged
Modify	Edit files in this branch before merging

Backup rights: If the upstream repository is later deleted or made private,
the last accepted version in PromptNotes is retained under backup rights.

Files modified (137)

README.md
plugin.json
skills/adaptyv/SKILL.md
skills/aeon/SKILL.md
skills/analytical-method-validation/SKILL.md
skills/anndata/SKILL.md
skills/arbor/SKILL.md
skills/arboreto/SKILL.md
skills/astropy/SKILL.md
skills/autoskill/SKILL.md
skills/benchling-integration/SKILL.md
skills/biopython/SKILL.md
skills/bioservices/SKILL.md
skills/bulk-rnaseq/SKILL.md
skills/cellxgene-census/SKILL.md
skills/cirq/SKILL.md
skills/citation-management/SKILL.md
skills/clinical-decision-support/SKILL.md
skills/clinical-reports/SKILL.md
skills/cobrapy/SKILL.md
skills/dask/SKILL.md
skills/database-lookup/SKILL.md
skills/datamol/SKILL.md
skills/deepchem/SKILL.md
skills/deeptools/SKILL.md
skills/diffdock/SKILL.md
skills/dnanexus-integration/SKILL.md
skills/esm/SKILL.md
skills/etetoolkit/SKILL.md
skills/experimental-design/SKILL.md
skills/exploratory-data-analysis/SKILL.md
skills/flowio/SKILL.md
skills/fluidsim/SKILL.md
skills/generate-image/SKILL.md
skills/geniml/SKILL.md
skills/genomic-coordinates/SKILL.md
skills/geomaster/SKILL.md
skills/geopandas/SKILL.md
skills/get-available-resources/SKILL.md
skills/gget/SKILL.md
… and 97 more

Auto-generated by PromptNotes upstream tracker v2 · 2026-09-02 17:26 UTC

## Upstream sync from `K-Dense-AI/scientific-agent-skills` (github) **Source:** https://github.com/K-Dense-AI/scientific-agent-skills **Forge:** github **Compare:** [1dd0fccf...1e5eeffb](https://github.com/K-Dense-AI/scientific-agent-skills/compare/1dd0fccf...1e5eeffb) --- ## Scan summary | Category | Files | |----------|-------| | Prompt / Skill files | 21 | | Catalogue / Reference files | 116 | > Prompt files are stored under `upstream/{owner}-{repo}/` > Catalogue files are stored under `upstream/{owner}-{repo}/catalogue/` --- ## Decision required | Option | Action | |--------|--------| | **Accept** | Merge this PR — changes ingested into PromptNotes | | **Reject** | Close this PR — local version preserved unchanged | | **Modify** | Edit files in this branch before merging | > **Backup rights:** If the upstream repository is later deleted or made private, > the last accepted version in PromptNotes is retained under backup rights. --- ## Files modified (137) - `README.md` - `plugin.json` - `skills/adaptyv/SKILL.md` - `skills/aeon/SKILL.md` - `skills/analytical-method-validation/SKILL.md` - `skills/anndata/SKILL.md` - `skills/arbor/SKILL.md` - `skills/arboreto/SKILL.md` - `skills/astropy/SKILL.md` - `skills/autoskill/SKILL.md` - `skills/benchling-integration/SKILL.md` - `skills/biopython/SKILL.md` - `skills/bioservices/SKILL.md` - `skills/bulk-rnaseq/SKILL.md` - `skills/cellxgene-census/SKILL.md` - `skills/cirq/SKILL.md` - `skills/citation-management/SKILL.md` - `skills/clinical-decision-support/SKILL.md` - `skills/clinical-reports/SKILL.md` - `skills/cobrapy/SKILL.md` - `skills/dask/SKILL.md` - `skills/database-lookup/SKILL.md` - `skills/datamol/SKILL.md` - `skills/deepchem/SKILL.md` - `skills/deeptools/SKILL.md` - `skills/diffdock/SKILL.md` - `skills/dnanexus-integration/SKILL.md` - `skills/esm/SKILL.md` - `skills/etetoolkit/SKILL.md` - `skills/experimental-design/SKILL.md` - `skills/exploratory-data-analysis/SKILL.md` - `skills/flowio/SKILL.md` - `skills/fluidsim/SKILL.md` - `skills/generate-image/SKILL.md` - `skills/geniml/SKILL.md` - `skills/genomic-coordinates/SKILL.md` - `skills/geomaster/SKILL.md` - `skills/geopandas/SKILL.md` - `skills/get-available-resources/SKILL.md` - `skills/gget/SKILL.md` - … and 97 more --- *Auto-generated by PromptNotes upstream tracker v2 · 2026-09-02 17:26 UTC*

promptadmin added 137 commits 2026-09-02 17:26:49 +00:00