upstream/K-Dense-AI-scientific-agent-skills/catalogue/skills/imaging-data-commons/references/digital_pathology_guide.md

@@ -2,9 +2,9 @@
 title: "Digital Pathology Guide for IDC"
 task: ""
 lineage_type: import
-upstream_source: https://github.com/K-Dense-AI/scientific-agent-skills/blob/9c9bd2e9/skills/imaging-data-commons/references/digital_pathology_guide.md
-upstream_sha: 9c9bd2e9
-imported_at: 2026-06-27
+upstream_source: https://github.com/K-Dense-AI/scientific-agent-skills/blob/d661d27e/skills/imaging-data-commons/references/digital_pathology_guide.md
+upstream_sha: d661d27e
+imported_at: 2026-08-11
 prompt_class: catalogue
 upstream_changes: accepted
 author: upstream
@@ -13,7 +13,7 @@ validated: false
 
 # Digital Pathology Guide for IDC
 
-**Tested with:** IDC data version v23, idc-index 0.11.10
+**Tested with:** idc-index 0.12.5 (IDC data version v24)
 
 For general IDC queries and downloads, use `idc-index` (see main SKILL.md). This guide covers slide microscopy (SM) imaging, microscopy bulk simple annotations (ANN), and segmentations (SEG) in the context of digital pathology in IDC.
 
@@ -264,12 +264,12 @@ client.sql_query("""
     SELECT
         ar.analysis_result_id,
         ar.analysis_result_title,
-        ar.Modalities,
-        ar.Subjects,
-        ar.Collections
+        ar.modalities,
+        ar.subjects,
+        ar.collections
     FROM analysis_results_index ar
-    WHERE ar.Modalities LIKE '%ANN%' OR ar.Modalities LIKE '%SEG%'
-    ORDER BY ar.Subjects DESC
+    WHERE ar.modalities LIKE '%ANN%' OR ar.modalities LIKE '%SEG%'
+    ORDER BY ar.subjects DESC
 """)
 ```