promptadmin/drug-discovery-prompts
1
0
Fork 0
Code Issues Pull Requests 29 Packages Projects Releases Wiki Activity

[Upstream sync] K-Dense-AI/scientific-agent-skills (github) — 3 added, 12 modified #38

Open
promptadmin wants to merge 15 commits from upstream-sync/scientific-agent-skills-20260811-d661d2-etzt into main
pull from: upstream-sync/scientific-agent-skills-20260811-d661d2-etzt
merge into: :main
Conversation 0 Commits 15 Files Changed 15
+6 -6
1 changed files with 6 additions and 6 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Showing only changes of commit 9e3f8687ac - Show all commits
upstream/K-Dense-AI-scientific-agent-skills/skills/imaging-data-commons/references/bigquery_guide.md
+6 -6
View File
@@ -2,9 +2,9 @@
title: "BigQuery Guide for IDC"
task: ""
lineage_type: import
upstream_source: https://github.com/K-Dense-AI/scientific-agent-skills/blob/9c9bd2e9/skills/imaging-data-commons/references/bigquery_guide.md
upstream_sha: 9c9bd2e9
imported_at: 2026-06-27
upstream_source: https://github.com/K-Dense-AI/scientific-agent-skills/blob/d661d27e/skills/imaging-data-commons/references/bigquery_guide.md
upstream_sha: d661d27e
imported_at: 2026-08-11
prompt_class: prompt
upstream_changes: accepted
author: upstream
@@ -13,7 +13,7 @@ validated: false
# BigQuery Guide for IDC
**Tested with:** IDC data version v23
**Tested with:** `bigquery-public-data.idc_current` and idc-index 0.12.5 (IDC data version v24)
For most queries and downloads, use `idc-index` (see main SKILL.md). This guide covers BigQuery for advanced use cases requiring full DICOM metadata or complex joins.
@@ -661,7 +661,7 @@ ORDER BY collection_id
- [Part 15 Appendix E - De-identification Profiles](https://dicom.nema.org/medical/dicom/current/output/chtml/part15/chapter_e.html)
**Community Resources:**
- [NAMIC Wiki: DWI/DTI DICOM](https://www.na-mic.org/wiki/NAMIC_Wiki:DTI:DICOM_for_DWI_and_DTI) - comprehensive vendor comparison for diffusion imaging
- [NAMIC Wiki: DWI/DTI DICOM](https://web.archive.org/web/20260520044207/https://www.na-mic.org/wiki/NAMIC_Wiki:DTI:DICOM_for_DWI_and_DTI) - comprehensive vendor comparison for diffusion imaging (archived; original NA-MIC wiki retired)
- [StandardizeBValue](https://github.com/nslay/StandardizeBValue) - tool to extract vendor b-values to standard tags
## Using Query Results with idc-index
@@ -673,7 +673,7 @@ from google.cloud import bigquery
from idc_index import IDCClient
# Initialize BigQuery client
# Requires: pip install google-cloud-bigquery
# Requires: the Python google-cloud-bigquery package
# Auth: gcloud auth application-default login
# Project: needed for billing even on public datasets (free tier applies)
bq_client = bigquery.Client(project="your-gcp-project-id")