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promptadmin 0c65e37620 Merge upstream-sync PR #26 (upstream-sync/tooluniverse-20260721-be422b-rxvf) 
Conflicts resolved keeping the upstream version: 3 file(s); deleted upstream: 0 file(s). Automated by resolve_upstream_sync.sh.
2026-10-26 17:05:48 +00:00
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create-tooluniverse-skill
[upstream-sync] skills/create-tooluniverse-skill/references/tool_testing_workflow.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:33:20 +00:00
devtu-auto-discover-apis/references
[upstream-sync] skills/devtu-auto-discover-apis/references/tool-templates.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:33:30 +00:00
devtu-benchmark-harness
[upstream-sync] skills/devtu-benchmark-harness/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:33:43 +00:00
devtu-code-optimization
[upstream-sync] skills/devtu-code-optimization/references/code-patterns.md from mims-harvard/ToolUniverse@3038dcbe [prompt]
2026-06-30 19:39:13 +00:00
devtu-create-tool
[upstream-sync] skills/devtu-create-tool/templates/simple_tools_config.json from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:35:04 +00:00
devtu-docs-quality
[upstream-sync] skills/devtu-docs-quality/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:35:26 +00:00
devtu-fix-tool
[upstream-sync] skills/devtu-fix-tool/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:35:47 +00:00
devtu-github
[upstream-sync] skills/devtu-github/instructions.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:36:04 +00:00
devtu-self-evolve
[upstream-sync] skills/devtu-self-evolve/references/persona-template.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:37:09 +00:00
host-and-share-remote-tool/agents
[upstream-sync] skills/host-and-share-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:33:05 +00:00
setup-boltz-remote-tool/agents
[upstream-sync] skills/setup-boltz-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:33:09 +00:00
setup-borzoi-remote-tool/agents
[upstream-sync] skills/setup-borzoi-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:33:14 +00:00
setup-cell2location-remote-tool/agents
[upstream-sync] skills/setup-cell2location-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:33:18 +00:00
setup-cellrank-remote-tool/agents
[upstream-sync] skills/setup-cellrank-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:33:22 +00:00
setup-celltypist-remote-tool/agents
[upstream-sync] skills/setup-celltypist-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:33:26 +00:00
setup-chrombpnet-remote-tool/agents
[upstream-sync] skills/setup-chrombpnet-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:33:31 +00:00
setup-depmap-24q2-remote-tool/agents
[upstream-sync] skills/setup-depmap-24q2-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:33:35 +00:00
setup-enformer-remote-tool/agents
[upstream-sync] skills/setup-enformer-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:33:39 +00:00
setup-esm-remote-tool/agents
[upstream-sync] skills/setup-esm-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:33:43 +00:00
setup-expert-feedback-remote-tool/agents
[upstream-sync] skills/setup-expert-feedback-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:33:47 +00:00
setup-harmony-remote-tool/agents
[upstream-sync] skills/setup-harmony-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:33:51 +00:00
setup-immune-compass-remote-tool/agents
[upstream-sync] skills/setup-immune-compass-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:33:56 +00:00
setup-ldsc-remote-tool/agents
[upstream-sync] skills/setup-ldsc-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:00 +00:00
setup-liana-remote-tool/agents
[upstream-sync] skills/setup-liana-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:04 +00:00
setup-macs3-remote-tool/agents
[upstream-sync] skills/setup-macs3-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:09 +00:00
setup-milo-remote-tool/agents
[upstream-sync] skills/setup-milo-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:13 +00:00
setup-mofa-remote-tool/agents
[upstream-sync] skills/setup-mofa-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:17 +00:00
setup-monocle3-remote-tool/agents
[upstream-sync] skills/setup-monocle3-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:21 +00:00
setup-paga-remote-tool/agents
[upstream-sync] skills/setup-paga-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:26 +00:00
setup-pinnacle-remote-tool/agents
[upstream-sync] skills/setup-pinnacle-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:30 +00:00
setup-scanvi-remote-tool/agents
[upstream-sync] skills/setup-scanvi-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:34 +00:00
setup-scrublet-remote-tool/agents
[upstream-sync] skills/setup-scrublet-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:38 +00:00
setup-scvelo-remote-tool/agents
[upstream-sync] skills/setup-scvelo-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:43 +00:00
setup-scvi-remote-tool/agents
[upstream-sync] skills/setup-scvi-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:48 +00:00
setup-singler-remote-tool/agents
[upstream-sync] skills/setup-singler-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:52 +00:00
setup-slingshot-remote-tool/agents
[upstream-sync] skills/setup-slingshot-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:34:56 +00:00
setup-squidpy-remote-tool/agents
[upstream-sync] skills/setup-squidpy-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:35:00 +00:00
setup-tangram-remote-tool/agents
[upstream-sync] skills/setup-tangram-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:35:05 +00:00
setup-tooluniverse
[upstream-sync] skills/setup-tooluniverse/TROUBLESHOOTING.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:38:04 +00:00
setup-transcriptformer-remote-tool/agents
[upstream-sync] skills/setup-transcriptformer-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:35:09 +00:00
setup-uspto-downloader-remote-tool/agents
[upstream-sync] skills/setup-uspto-downloader-remote-tool/agents/openai.yaml from mims-harvard/ToolUniverse@1aaaf00d [prompt]
2026-08-20 04:35:14 +00:00
tooluniverse
[upstream-sync] skills/tooluniverse/SKILL.md from mims-harvard/ToolUniverse@cfd26718 [skill]
2026-08-08 15:50:04 +00:00
tooluniverse-antibody-engineering
[upstream-sync] skills/tooluniverse-antibody-engineering/WORKFLOW_DETAILS.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:39:42 +00:00
tooluniverse-binder-discovery
[upstream-sync] skills/tooluniverse-binder-discovery/WORKFLOW_DETAILS.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:40:17 +00:00
tooluniverse-cancer-genomics-tcga
[upstream-sync] skills/tooluniverse-cancer-genomics-tcga/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:40:31 +00:00
tooluniverse-cancer-variant-interpretation
[upstream-sync] skills/tooluniverse-cancer-variant-interpretation/TOOLS_REFERENCE.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:41:09 +00:00
tooluniverse-chemical-compound-retrieval
[upstream-sync] skills/tooluniverse-chemical-compound-retrieval/examples.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:41:27 +00:00
tooluniverse-clinical-trial-design
[upstream-sync] skills/tooluniverse-clinical-trial-design/WORKFLOW_DETAILS.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:43:12 +00:00
tooluniverse-clinical-trial-matching
[upstream-sync] skills/tooluniverse-clinical-trial-matching/TRIAL_SEARCH_PATTERNS.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:43:56 +00:00
tooluniverse-crispr-screen-analysis
[upstream-sync] skills/tooluniverse-crispr-screen-analysis/FALLBACK_PATCH.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:44:33 +00:00
tooluniverse-cs-setup/templates
[upstream-sync] skills/tooluniverse-cs-setup/templates/router_SKILL.md from mims-harvard/ToolUniverse@bb632a34 [prompt]
2026-07-01 19:44:35 +00:00
tooluniverse-custom-tool/references
[upstream-sync] skills/tooluniverse-custom-tool/references/python-tool.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:45:18 +00:00
tooluniverse-data-wrangling
[upstream-sync] skills/tooluniverse-data-wrangling/references/specialized-domains.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:45:36 +00:00
tooluniverse-dataset-discovery
[upstream-sync] skills/tooluniverse-dataset-discovery/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:45:41 +00:00
tooluniverse-disease-research
[upstream-sync] skills/tooluniverse-disease-research/tool_usage_details.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:46:19 +00:00
tooluniverse-drug-repurposing
[upstream-sync] skills/tooluniverse-drug-repurposing/strategies_and_patterns.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:47:15 +00:00
tooluniverse-drug-target-validation
[upstream-sync] skills/tooluniverse-drug-target-validation/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:48:10 +00:00
tooluniverse-epidemiological-analysis
[upstream-sync] skills/tooluniverse-epidemiological-analysis/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:48:35 +00:00
tooluniverse-epigenomics
[upstream-sync] skills/tooluniverse-epigenomics/QUICK_START.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:48:55 +00:00
tooluniverse-gene-disease-association
[upstream-sync] skills/tooluniverse-gene-disease-association/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:49:56 +00:00
tooluniverse-gene-enrichment/references
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2026-08-11 22:02:49 +00:00
tooluniverse-gpcr-structural-pharmacology
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2026-06-26 21:50:38 +00:00
tooluniverse-gwas-drug-discovery
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2026-06-26 21:50:52 +00:00
tooluniverse-gwas-trait-to-gene
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2026-06-26 21:51:37 +00:00
tooluniverse-image-analysis/references
[upstream-sync] skills/tooluniverse-image-analysis/references/statistical_analysis.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:52:17 +00:00
tooluniverse-immune-repertoire-analysis
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2026-06-26 21:52:27 +00:00
tooluniverse-immunotherapy-response-prediction
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2026-06-26 21:53:13 +00:00
tooluniverse-infectious-disease
[upstream-sync] skills/tooluniverse-infectious-disease/phase_details.md from mims-harvard/ToolUniverse@e2520a96 [prompt]
2026-06-26 21:53:36 +00:00
tooluniverse-lipidomics
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2026-06-26 21:53:58 +00:00
tooluniverse-metabolomics
[upstream-sync] skills/tooluniverse-metabolomics/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [skill]
2026-06-26 21:55:14 +00:00
tooluniverse-metabolomics-analysis
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2026-06-26 21:54:55 +00:00
tooluniverse-metabolomics-pathway
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2026-06-26 21:55:05 +00:00
tooluniverse-multiomic-disease-characterization
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2026-08-11 22:02:56 +00:00
tooluniverse-network-pharmacology
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2026-06-26 21:57:10 +00:00
tooluniverse-nih-funding-landscape/agents
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2026-08-30 05:08:30 +00:00
tooluniverse-noncoding-rna
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2026-06-26 21:57:43 +00:00
tooluniverse-pathway-disease-genetics
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2026-06-26 21:57:52 +00:00
tooluniverse-pharmacogenomics
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2026-06-26 21:58:11 +00:00
tooluniverse-phylogenetics
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2026-06-26 21:59:25 +00:00
tooluniverse-population-genetics
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2026-06-26 21:59:43 +00:00
tooluniverse-precision-medicine-stratification
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2026-06-26 22:00:14 +00:00
tooluniverse-precision-oncology
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2026-07-21 09:44:57 +00:00
tooluniverse-protein-interactions
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2026-06-26 22:01:38 +00:00
tooluniverse-protein-lof-mechanism
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2026-06-26 22:02:10 +00:00
tooluniverse-protein-sae-variant-interpretation
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2026-06-26 22:02:21 +00:00
tooluniverse-protein-structure-retrieval
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2026-06-26 22:02:48 +00:00
tooluniverse-rare-disease-diagnosis
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2026-07-21 09:46:07 +00:00
tooluniverse-residue-functional-mechanism-interpretation
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2026-06-26 22:04:33 +00:00
tooluniverse-rnaseq-deseq2/references
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2026-06-26 22:05:20 +00:00
tooluniverse-sdk
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2026-06-26 22:05:23 +00:00
tooluniverse-self-review
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2026-08-08 15:49:11 +00:00
tooluniverse-sequence-retrieval
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2026-06-26 22:05:49 +00:00
tooluniverse-single-cell
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2026-06-26 22:06:34 +00:00
tooluniverse-spatial-omics-analysis
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2026-06-26 22:07:00 +00:00
tooluniverse-spatial-transcriptomics
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2026-06-26 22:07:10 +00:00
tooluniverse-statistical-modeling
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2026-07-21 09:46:33 +00:00
tooluniverse-structural-variant-analysis
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2026-06-26 22:08:16 +00:00
tooluniverse-systems-biology
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2026-06-26 22:08:36 +00:00
tooluniverse-target-research
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2026-08-11 22:02:58 +00:00
tooluniverse-toxicology
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2026-06-26 22:09:24 +00:00
tooluniverse-variant-analysis/references
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2026-06-26 22:09:51 +00:00
tooluniverse-variant-interpretation
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2026-07-21 09:46:55 +00:00
tooluniverse-variant-predictor-dms-validation
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2026-06-26 22:10:32 +00:00
tooluniverse-variant-to-mechanism
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2026-06-26 22:10:36 +00:00