57 lines
1.7 KiB
YAML
57 lines
1.7 KiB
YAML
---
|
|
title: "Provenance-backed single-cell and biomedical benchmark enrichment batch."
|
|
task: ""
|
|
lineage_type: import
|
|
upstream_source: https://github.com/inoue0426/awesome-computational-biology/blob/7a064bf0/data/enrichment.benchmark-v2.yml
|
|
upstream_sha: 7a064bf0
|
|
imported_at: 2026-08-08
|
|
prompt_class: catalogue
|
|
upstream_changes: accepted
|
|
author: upstream
|
|
validated: false
|
|
---
|
|
|
|
# Provenance-backed single-cell and biomedical benchmark enrichment batch.
|
|
resources:
|
|
scmulan:
|
|
entities: [cell, gene]
|
|
methods: [language-model, transformer]
|
|
modalities: [epigenomics, multi-omics, proteomics, single-cell-rna-seq, transcriptomics]
|
|
tasks: [foundation-model-pretraining, representation-learning]
|
|
github: https://github.com/SuperBianC/scMulan
|
|
last_checked: 2026-08-08
|
|
metadata_sources:
|
|
- https://github.com/SuperBianC/scMulan
|
|
|
|
proteingym:
|
|
entities: [protein]
|
|
modalities: [protein-sequence]
|
|
tasks: [regression]
|
|
github: https://github.com/OATML-Markslab/ProteinGym
|
|
last_checked: 2026-08-08
|
|
metadata_sources:
|
|
- https://github.com/OATML-Markslab/ProteinGym
|
|
|
|
lincs_l1000:
|
|
entities: [cell, compound, gene]
|
|
modalities: [transcriptomics]
|
|
tasks: [perturbation-prediction]
|
|
last_checked: 2026-08-08
|
|
metadata_sources:
|
|
- https://lincsproject.org/LINCS/tools/workflows/find-the-best-place-to-obtain-the-lincs-l1000-data
|
|
|
|
prism:
|
|
entities: [cell, drug]
|
|
tasks: [drug-response-prediction]
|
|
last_checked: 2026-08-08
|
|
metadata_sources:
|
|
- https://depmap.org/portal/prism/
|
|
|
|
pharmgkb:
|
|
entities: [drug, gene, phenotype, variant]
|
|
modalities: [clinical, genomics]
|
|
tasks: [drug-response-prediction]
|
|
last_checked: 2026-08-08
|
|
metadata_sources:
|
|
- https://www.pharmgkb.org/
|