93 lines
2.5 KiB
YAML
93 lines
2.5 KiB
YAML
---
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title: "Provenance-backed drug-response and pharmacogenomics enrichment batch."
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task: ""
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lineage_type: import
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upstream_source: https://github.com/inoue0426/awesome-computational-biology/blob/7a064bf0/data/enrichment.pharmacogenomics-v1.yml
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upstream_sha: 7a064bf0
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imported_at: 2026-08-08
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prompt_class: catalogue
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upstream_changes: accepted
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author: upstream
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validated: false
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---
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# Provenance-backed drug-response and pharmacogenomics enrichment batch.
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resources:
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beat_aml:
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entities: [cell, disease, drug, gene]
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modalities: [genomics]
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tasks: [drug-response-prediction]
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last_checked: 2026-08-08
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metadata_sources:
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- https://biodev.github.io/BeatAML2/
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cancer_therapeutics_response_portal_ctrp:
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entities: [cell, drug]
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tasks: [drug-response-prediction]
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last_checked: 2026-08-08
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metadata_sources:
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- https://portals.broadinstitute.org/ctrp/
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bindingdb_curated_sets:
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entities: [molecule, protein]
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modalities: [chemical-structure]
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tasks: [drug-target-interaction]
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last_checked: 2026-08-08
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metadata_sources:
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- https://www.bindingdb.org/
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bace:
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entities: [molecule, protein]
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modalities: [chemical-structure]
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tasks: [classification, regression]
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last_checked: 2026-08-08
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metadata_sources:
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- https://www.kaggle.com/datasets/gokturkkoch/bace
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clintox:
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entities: [drug]
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modalities: [clinical]
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tasks: [classification]
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last_checked: 2026-08-08
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metadata_sources:
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- https://tdcommons.ai/single_pred_tasks/tox/#clintox
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sider_side_effect_resource:
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entities: [drug, phenotype]
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modalities: [clinical]
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last_checked: 2026-08-08
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metadata_sources:
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- http://sideeffects.embl.de/
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pk_db:
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entities: [drug]
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modalities: [clinical]
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last_checked: 2026-08-08
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metadata_sources:
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- https://pk-db.com/
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scperturb:
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entities: [cell, drug, gene]
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modalities: [single-cell-rna-seq]
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tasks: [perturbation-prediction]
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github: https://github.com/sanderlab/scPerturb
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last_checked: 2026-08-08
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metadata_sources:
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- https://github.com/sanderlab/scPerturb
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genomics_of_drug_sensitivity_in_cancer_gdsc:
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entities: [cell, drug, gene]
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modalities: [genomics]
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tasks: [drug-response-prediction]
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last_checked: 2026-08-08
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metadata_sources:
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- https://www.cancerrxgene.org/
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cellminer_cross_database_cellminercdb:
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entities: [cell, drug, gene]
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modalities: [genomics]
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tasks: [drug-response-prediction]
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last_checked: 2026-08-08
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metadata_sources:
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- https://discover.nci.nih.gov/cellminercdb/
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