65 lines
2.1 KiB
YAML
65 lines
2.1 KiB
YAML
---
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title: "Provenance-backed protein model enrichment batch."
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task: ""
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lineage_type: import
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upstream_source: https://github.com/inoue0426/awesome-computational-biology/blob/7a064bf0/data/enrichment.protein-v2.yml
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upstream_sha: 7a064bf0
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imported_at: 2026-08-08
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prompt_class: catalogue
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upstream_changes: accepted
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author: upstream
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validated: false
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---
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# Provenance-backed protein model enrichment batch.
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resources:
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esm3:
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entities: [protein]
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methods: [generative-model, language-model, transformer]
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modalities: [molecular-structure, protein-sequence]
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tasks: [protein-sequence-design, representation-learning]
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github: https://github.com/evolutionaryscale/esm
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last_checked: 2026-08-08
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metadata_sources:
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- https://github.com/evolutionaryscale/esm
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evolutionary_scale_modeling_esm:
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entities: [protein]
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methods: [language-model, self-supervised-learning, transformer]
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modalities: [protein-sequence]
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tasks: [representation-learning]
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github: https://github.com/facebookresearch/esm
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last_checked: 2026-08-08
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metadata_sources:
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- https://github.com/facebookresearch/esm
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prottrans:
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entities: [protein]
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methods: [language-model, self-supervised-learning, transformer]
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modalities: [protein-sequence]
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tasks: [representation-learning]
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github: https://github.com/agemagician/ProtTrans
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last_checked: 2026-08-08
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metadata_sources:
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- https://github.com/agemagician/ProtTrans
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progen2:
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entities: [protein]
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methods: [generative-model, language-model, transformer]
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modalities: [protein-sequence]
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tasks: [protein-sequence-design, representation-learning]
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github: https://github.com/salesforce/progen
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last_checked: 2026-08-08
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metadata_sources:
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- https://github.com/salesforce/progen
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alphafold3:
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entities: [molecule, protein, protein-complex]
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methods: [diffusion]
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modalities: [molecular-structure, protein-sequence]
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tasks: [structure-prediction]
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github: https://github.com/google-deepmind/alphafold3
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last_checked: 2026-08-08
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metadata_sources:
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- https://github.com/google-deepmind/alphafold3
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