life-science-ai-prompts/upstream/inoue0426-awesome-computational-biology/catalogue/contributing.md

title, task, lineage_type, upstream_source, upstream_sha, imported_at, prompt_class, upstream_changes, author, validated

title	task	lineage_type	upstream_source	upstream_sha	imported_at	prompt_class	upstream_changes	author	validated
Contribution Guidelines		import	https://github.com/inoue0426/awesome-computational-biology/blob/12d87583/contributing.md	12d87583	2026-06-26	catalogue	accepted	upstream	false

Contribution Guidelines

Contributions are welcome!

Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.

Pull Requests

• Search previous suggestions before making a new one, as yours may be a duplicate.
• Add one link per pull request.
• Prefer official and trustworthy sources (official docs, organization pages, maintained repositories, or official dataset pages).
• Include supporting technical evidence for new resources:
  • Ideally a peer-reviewed publication.
  • At minimum, a preprint or official technical documentation.
• Avoid submissions that are primarily promotional pages, generic blog posts, or opinion-only writeups.
• Add the link:
  • [name](http://example.com/) - A short description ends with a period.
  • Keep descriptions concise.
  • Maintain alphabetical ordering where applicable.
• Add a section if needed.
  • Add the section description.
  • Add the section title to the Index.
• Check your spelling and grammar.
• Remove any trailing whitespace.
• Send a pull request with the reason why the addition is awesome.
• Use the following format for your pull request title:
  • Add user/repo - Short repo description

Data Workflow (README and JSON)

• The curated source list is maintained in README.md.
• Machine-readable files are generated from README:
  • python scripts/sync_resources_from_readme.py
  • python scripts/build_resources.py
• For resource additions/edits, include updated generated files in the same PR:
  • data/resources.yml
  • data/resources.json
  • data/resources.csv
  • docs/data/resources.json
• Field definitions and naming rules are documented in docs/data/SCHEMA.md.

GitHub Pages UI

• The UI reads docs/data/resources.json.
• Search and filters are driven by these fields:
  • Search: name, description, tasks, modalities, tags
  • Filters: type, tasks, modalities

Updates to Existing Links or Sections

• Improvements to the existing sections are welcome.
• If you think a listed link is not awesome, feel free to submit an issue or pull request to begin the discussion.
• Broken links are checked by CI; if you find one, please submit a fix to the canonical URL (or remove the entry if no stable canonical URL exists).

Updating your PR

A lot of times, making a PR adhere to the standards above can be difficult. If the maintainers notice anything that we'd like changed, we'll ask you to edit your PR before we merge it. There's no need to open a new PR, just edit the existing one. If you're not sure how to do that, here is a guide on the different ways you can update your PR so that we can merge it.