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[upstream-sync] skills/pytorch-lightning/references/logging.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/pytorch-lightning/references/lightning_module.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [unknown]
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[upstream-sync] skills/pytorch-lightning/references/distributed_training.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [unknown]
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[upstream-sync] skills/pytorch-lightning/references/data_module.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [unknown]
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[upstream-sync] skills/pytorch-lightning/references/callbacks.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/pytorch-lightning/references/best_practices.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/pytorch-lightning/SKILL.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [unknown]
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[upstream-sync] skills/pytdc/references/utilities.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/pytdc/references/oracles.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/pytdc/references/datasets.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [catalogue]
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[upstream-sync] skills/pytdc/SKILL.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [unknown]
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[upstream-sync] skills/pysam/references/common_workflows.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/pysam/references/alignment_files.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/pysam/SKILL.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/pyopenms/references/signal_processing.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/pyopenms/references/file_io.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]