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[upstream-sync] skills/omero-integration/references/tables.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/omero-integration/references/scripts.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/omero-integration/references/rois.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/omero-integration/references/metadata.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/omero-integration/references/image_processing.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/omero-integration/references/data_access.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/omero-integration/references/connection.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/omero-integration/references/advanced.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/omero-integration/SKILL.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/nextflow/references/testing.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [unknown]
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[upstream-sync] skills/nextflow/references/running-pipelines.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [unknown]
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[upstream-sync] skills/nextflow/references/nf-core-tools.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [unknown]
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[upstream-sync] skills/nextflow/references/language.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/nextflow/references/developing.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/nextflow/references/containers.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/nextflow/references/configuration.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/nextflow/SKILL.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/neuropixels-analysis/references/standard_workflow.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/neuropixels-analysis/references/plotting_guide.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [prompt]
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[upstream-sync] skills/neuropixels-analysis/references/api_reference.md from K-Dense-AI/scientific-agent-skills@9c9bd2e9 [unknown]