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2
Commits
| Author | SHA1 | Date | |
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 promptadmin
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a3f2cfb89f | ||
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promptadmin
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4f8afd4f89 |
@@ -1,8 +1,8 @@
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---
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lineage_type: import
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upstream_source: https://github.com/mims-harvard/ToolUniverse/blob/e2520a96/skills/setup-tooluniverse/SKILL.md
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upstream_sha: e2520a96
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imported_at: 2026-06-26
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upstream_source: https://github.com/mims-harvard/ToolUniverse/blob/7dace8a3/skills/setup-tooluniverse/SKILL.md
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upstream_sha: 7dace8a3
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imported_at: 2026-07-16
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prompt_class: catalogue
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upstream_changes: accepted
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name: setup-tooluniverse
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@@ -156,7 +156,7 @@ Make sure Step 2 is done (`uv --version` works).
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> claude plugin marketplace add mims-harvard/ToolUniverse
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> claude plugin install tooluniverse@tooluniverse
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> ```
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> This installs MCP server + 115 skills + slash commands in one step.
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> This installs MCP server + 115 skills + slash commands in one step. Then see the `tooluniverse-claude-code-plugin` skill's "Recommended: turn on auto-update" step so future releases apply without manual `claude plugin update`.
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| Client | File | How to Access |
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|--------|------|---------------|
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-115
@@ -1,115 +0,0 @@
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---
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lineage_type: import
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upstream_source: https://github.com/mims-harvard/ToolUniverse/blob/beea85fa/skills/tooluniverse-antigravity-plugin/SKILL.md
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upstream_sha: beea85fa
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imported_at: 2026-07-21
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prompt_class: unknown
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upstream_changes: accepted
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name: tooluniverse-antigravity-plugin
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description: Install, set up, verify, update, pin, uninstall, or troubleshoot the ToolUniverse plugin on Google Antigravity (AGY / Antigravity IDE / Antigravity 2.0). ALWAYS consult this skill for any of those — don't answer from memory, because the exact CLI name (agy), the "agy plugin install <path>" flow, the uvx tooluniverse MCP server, and the API-key env vars are easy to get wrong. Use it whenever someone wants to get ToolUniverse (or "the 1000+ scientific tools" / "the harvard tools") working on Antigravity, says the Antigravity plugin or its tools/skills won't load, hits a uvx or MCP-server startup error, asks how Antigravity updates it, wants to pin or remove it, or finds it running an old tool version. Not for the Codex plugin (use tooluniverse-codex-plugin) or Claude Code plugin (use tooluniverse-claude-code-plugin), for running research with the tools, or for authoring new tools or skills.
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disable-model-invocation: true
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---
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# Install the ToolUniverse Plugin for Google Antigravity (AGY)
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One-step install on Google Antigravity (AGY / Antigravity IDE / Antigravity 2.0): an MCP server exposing 1000+ scientific tools plus 120+ research skills — all auto-configured.
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## Prerequisites (check once)
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```bash
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uv --version # provides `uvx`; if missing: curl -LsSf https://astral.sh/uv/install.sh | sh
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agy --version # Antigravity CLI; if missing: https://antigravity.google
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```
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## Install
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In Antigravity, plugins can be installed using the `agy` CLI:
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### Option 1: Direct path / imported plugin install (recommended)
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```bash
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# If installed via Claude Code / Codex marketplace cache or cloned repo:
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agy plugin install /path/to/ToolUniverse/plugin
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```
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### Option 2: Clone + install
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```bash
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git clone https://github.com/mims-harvard/ToolUniverse.git
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cd ToolUniverse
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agy plugin install ./plugin
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```
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Restart Antigravity. The MCP server auto-starts via `uvx tooluniverse` on first use (~30 s cold start while the package downloads, instant after).
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## Verify it worked
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```bash
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agy plugin list
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```
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Expect output showing `tooluniverse` under `imports`:
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```json
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{
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"imports": [
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{
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"name": "tooluniverse",
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"source": "claude-code",
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"components": [
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"skills",
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"agents",
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"mcpServers",
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"hooks",
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"commands"
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]
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}
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]
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}
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```
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Inside Antigravity, just ask naturally:
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```
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What are the top mutated genes in breast cancer?
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Research the drug metformin.
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```
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The research skills auto-activate on matching questions, and the MCP tools are discovered and run via `find_tools` → `execute_tool` — no command prefix needed.
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## What you get
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| Component | What it does | How it's used |
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|---|---|---|
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| **MCP server** | 1000+ tools via `find_tools`, `get_tool_info`, `execute_tool` | Auto-loaded; no action needed |
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| **120+ skills** | Structured research workflows (drug discovery, variant interpretation, pharmacovigilance, phylogenetics, statistical modeling, etc.) | Auto-activate on matching questions |
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| **Research agent** | Autonomous multi-database research subagent | Auto-routed on complex research tasks |
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## API keys (optional, but recommended)
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Most tools work without keys. For higher rate limits or gated databases, set the keys you care about in `~/.gemini/config/plugins/tooluniverse/mcp_config.json` or pass them in environment variables:
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```bash
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export NCBI_API_KEY="your_key"
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export ONCOKB_API_TOKEN="your_token"
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export SEMANTIC_SCHOLAR_API_KEY="your_key"
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```
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## Update
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```bash
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uv cache clean tooluniverse
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```
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Restart Antigravity.
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## Troubleshooting
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| Symptom | Fix |
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|---|---|
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| `uvx: command not found` | Install `uv` (see Prerequisites), reopen terminal. |
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| MCP server won't start | Run `uv cache clean tooluniverse` or `uvx --refresh tooluniverse --help` in terminal. |
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| Plugin installs but tools missing | Restart Antigravity CLI/IDE. First launch downloads the package (~30 s). |
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| `requires-python >= 3.10` | `uv python install 3.12` |
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Still stuck: https://github.com/mims-harvard/ToolUniverse/issues
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+31
-4
@@ -1,8 +1,8 @@
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---
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lineage_type: import
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upstream_source: https://github.com/mims-harvard/ToolUniverse/blob/e2520a96/skills/tooluniverse-claude-code-plugin/SKILL.md
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upstream_sha: e2520a96
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imported_at: 2026-06-26
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upstream_source: https://github.com/mims-harvard/ToolUniverse/blob/7dace8a3/skills/tooluniverse-claude-code-plugin/SKILL.md
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upstream_sha: 7dace8a3
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imported_at: 2026-07-16
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prompt_class: catalogue
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upstream_changes: accepted
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name: tooluniverse-claude-code-plugin
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@@ -21,7 +21,7 @@ uv --version # must exist; if not: curl -LsSf https://astral.sh/uv/install
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claude --version # Claude Code CLI; if not: https://claude.com/claude-code
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```
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## Install (two commands)
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## Install
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```bash
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# 1. Register the ToolUniverse marketplace from GitHub
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@@ -33,6 +33,29 @@ claude plugin install tooluniverse@tooluniverse
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That's it. Restart Claude Code. The MCP server auto-starts via `uvx tooluniverse` on first use (~30 s cold start, instant after).
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### Recommended: turn on auto-update
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Third-party marketplaces default to **no auto-update** — without this, new tools/skills only reach you when you remember to run `claude plugin update tooluniverse` (see Update below). Turn it on once:
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```bash
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python3 -c "
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import json, pathlib, sys
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p = pathlib.Path.home() / '.claude/plugins/known_marketplaces.json'
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d = json.loads(p.read_text())
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if 'tooluniverse' not in d:
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sys.exit('Run the marketplace add command above first')
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d['tooluniverse']['autoUpdate'] = True
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p.write_text(json.dumps(d, indent=2))
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print('autoUpdate enabled for tooluniverse')
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"
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```
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Equivalent interactive path: `/plugin` → Marketplaces → `tooluniverse` → Enable auto-update.
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With this on, Claude Code checks for marketplace + plugin updates in the background after each session start (up to a ~10 min random delay) and updates the installed plugin on disk automatically. You'll get a `/reload-plugins` prompt when an update lands, or it applies on your next launch — no more manual `claude plugin update`.
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This is local, per-machine state — it can't be shipped as a default from the plugin's own manifest. `marketplace.json` has no `autoUpdate` field; Claude Code intentionally keeps this a per-installation trust boundary so a publisher can't force silent auto-updates onto a user's machine.
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### Important: Remove global skills if previously installed
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If you previously installed ToolUniverse skills globally (via `tooluniverse-install-skills` or manual copy), **remove them**. The plugin includes all skills — global copies interfere with the plugin's skill routing.
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@@ -121,6 +144,10 @@ Full API-key list: `setup-tooluniverse` skill → `API_KEYS_REFERENCE.md`.
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## Update
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If you enabled auto-update above, this happens automatically in the background — no action needed.
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Otherwise, update manually:
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```bash
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claude plugin update tooluniverse
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# Also refresh the MCP server's tool cache:
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Reference in New Issue
Block a user