[Upstream sync] K-Dense-AI/scientific-agent-skills (github) — 45 added, 56 modified #33

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---
lineage_type: import
upstream_source: https://github.com/K-Dense-AI/scientific-agent-skills/blob/9c9bd2e9/skills/arboreto/SKILL.md
upstream_sha: 9c9bd2e9
imported_at: 2026-06-26
upstream_source: https://github.com/K-Dense-AI/scientific-agent-skills/blob/991bd993/skills/arboreto/SKILL.md
upstream_sha: 991bd993
imported_at: 2026-08-08
prompt_class: prompt
upstream_changes: accepted
name: arboreto
description: Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
license: BSD-3-Clause license
metadata: {"version": "1.0", "skill-author": "K-Dense Inc."}
metadata:
version: "1.0"
skill-author: K-Dense Inc.
---
# Arboreto