[Upstream sync] K-Dense-AI/scientific-agent-skills (github) — 45 added, 56 modified #33

Merged
promptadmin merged 101 commits from upstream-sync/scientific-agent-skills-20260808-991bd9-sesb into main 2026-08-09 18:31:46 +00:00
101 Commits
Author SHA1 Message Date
promptadmin 6c9d126c20 [upstream-sync] skills/gget/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:47:05 +00:00
promptadmin 39138cf999 [upstream-sync] skills/get-available-resources/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:46:54 +00:00
promptadmin a8d802dc43 [upstream-sync] skills/geopandas/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:46:45 +00:00
promptadmin f7088c7af3 [upstream-sync] skills/geomaster/references/troubleshooting.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:46:35 +00:00
promptadmin c04e19d42b [upstream-sync] skills/geomaster/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:46:24 +00:00
promptadmin 5308825673 [upstream-sync] skills/geomaster/README.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:46:15 +00:00
promptadmin b068d9e7fc [upstream-sync] skills/genomic-intelligence/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:46:06 +00:00
promptadmin 72d43a000d [upstream-sync] skills/geniml/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:45:57 +00:00
promptadmin a36097ad60 [upstream-sync] skills/generate-image/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:45:48 +00:00
promptadmin 439a44a705 [upstream-sync] skills/fluidsim/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:45:38 +00:00
promptadmin 2aa910a89f [upstream-sync] skills/flowio/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:45:30 +00:00
promptadmin 6f5a96323c [upstream-sync] skills/exploratory-data-analysis/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:45:24 +00:00
promptadmin 0af3017b92 [upstream-sync] skills/experimental-design/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:45:16 +00:00
promptadmin fe2b16e0d4 [upstream-sync] skills/exa-search/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:45:07 +00:00
promptadmin edc34e398b [upstream-sync] skills/etetoolkit/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:44:57 +00:00
promptadmin d26cf459e3 [upstream-sync] skills/esm/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:44:48 +00:00
promptadmin 48ff989b34 [upstream-sync] skills/docx/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:44:37 +00:00
promptadmin ce814252c0 [upstream-sync] skills/diffdock/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:44:30 +00:00
promptadmin a6bcf24c30 [upstream-sync] skills/dhdna-profiler/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:44:21 +00:00
promptadmin 3101781489 [upstream-sync] skills/depmap/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:44:12 +00:00
promptadmin cafc9b8c16 [upstream-sync] skills/deeptools/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:44:03 +00:00
promptadmin 1194ebf526 [upstream-sync] skills/deepchem/references/workflows.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:43:53 +00:00
promptadmin cf4cc04351 [upstream-sync] skills/deepchem/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:43:45 +00:00
promptadmin 2b8271c0b2 [upstream-sync] skills/datamol/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:43:37 +00:00
promptadmin 71f59a8e7f [upstream-sync] skills/database-lookup/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:43:28 +00:00
promptadmin 56b7de63f2 [upstream-sync] skills/dask/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:43:20 +00:00
promptadmin c534f7799a [upstream-sync] skills/consciousness-council/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:43:10 +00:00
promptadmin b0d09bed6e [upstream-sync] skills/cobrapy/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:42:56 +00:00
promptadmin 86ae2dc3c4 [upstream-sync] skills/clinical-decision-support/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:42:43 +00:00
promptadmin bf4457747c [upstream-sync] skills/citation-management/references/google_scholar_search.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:42:32 +00:00
promptadmin 159811eb05 [upstream-sync] skills/citation-management/references/citation_validation.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:42:20 +00:00
promptadmin 5613e21093 [upstream-sync] skills/citation-management/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:42:10 +00:00
promptadmin 679078d375 [upstream-sync] skills/cirq/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:42:01 +00:00
promptadmin 138a5bfcec [upstream-sync] skills/cellxgene-census/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:41:51 +00:00
promptadmin 4f1b7bea80 [upstream-sync] skills/bulk-rnaseq/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:41:43 +00:00
promptadmin 3e41f7ef96 [upstream-sync] skills/bioservices/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:41:34 +00:00
promptadmin c336c82546 [upstream-sync] skills/biopython/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:41:24 +00:00
promptadmin 98d7131a6a [upstream-sync] skills/bids/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:41:15 +00:00
promptadmin 76a4a112bd [upstream-sync] skills/bgpt-paper-search/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:41:06 +00:00
promptadmin f48cece51b [upstream-sync] skills/benchling-integration/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:40:57 +00:00
promptadmin 398041e4a6 [upstream-sync] skills/autoskill/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:40:47 +00:00
promptadmin ed495cf3a3 [upstream-sync] skills/astropy/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:40:37 +00:00
promptadmin 9a522371e1 [upstream-sync] skills/arboreto/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:40:21 +00:00
promptadmin bce2be096b [upstream-sync] skills/arbor/references/arbor-upstream.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:40:10 +00:00
promptadmin 1a0b0514b4 [upstream-sync] skills/arbor/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:40:01 +00:00
promptadmin 8158edfa0f [upstream-sync] skills/anndata/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:39:51 +00:00
promptadmin 5332e24463 [upstream-sync] skills/aeon/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:39:43 +00:00
promptadmin c73d3da660 [upstream-sync] skills/adaptyv/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:39:34 +00:00
promptadmin 72026b496c [upstream-sync] docs/skills.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:39:25 +00:00
promptadmin f2e1e98259 [upstream-sync] docs/security-report.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:39:16 +00:00
promptadmin d7bfa0f8ac [upstream-sync] docs/examples.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:39:07 +00:00
promptadmin 8fb7160143 [upstream-sync] SECURITY.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:38:53 +00:00
promptadmin 60ccfb8dc3 [upstream-sync] README.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:38:45 +00:00
promptadmin bfedd081cb [upstream-sync] CONTRIBUTING.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:38:37 +00:00
promptadmin 2d0652fc5b [upstream-sync] .github/workflows/security-scan.yml from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:38:29 +00:00
promptadmin 298736331a [upstream-sync] .github/workflows/pr-skill-scan.yml from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:38:22 +00:00
promptadmin 739da6b6ac [upstream-sync] skills/gget/references/common_workflows.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:38:13 +00:00
promptadmin 011841661d [upstream-sync] skills/genomic-coordinates/references/variant-representation.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:38:05 +00:00
promptadmin 910fcbc3a2 [upstream-sync] skills/genomic-coordinates/references/transcript-coordinates.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:37:56 +00:00
promptadmin 959a593bc1 [upstream-sync] skills/genomic-coordinates/references/reference-builds.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:37:48 +00:00
promptadmin fd3e4b1405 [upstream-sync] skills/genomic-coordinates/references/format-conventions.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:37:39 +00:00
promptadmin 9cb83a97ae [upstream-sync] skills/genomic-coordinates/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:37:32 +00:00
promptadmin e5a4a305b3 [upstream-sync] skills/generate-image/references/models.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:37:24 +00:00
promptadmin 9e1842ac0c [upstream-sync] skills/deeptools/references/core_workflows.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:37:16 +00:00
promptadmin b6b40bda8b [upstream-sync] skills/deepspot-m/references/whole_slide.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:37:08 +00:00
promptadmin 0efd5b1fb4 [upstream-sync] skills/deepspot-m/references/api.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:37:00 +00:00
promptadmin 9dfb664f7c [upstream-sync] skills/deepspot-m/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:36:52 +00:00
promptadmin 2e59f36aef [upstream-sync] skills/deepchem/references/typical_workflows.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:36:45 +00:00
promptadmin 876791d70f [upstream-sync] skills/deepchem/references/core_capabilities.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:36:37 +00:00
promptadmin 7c588aad24 [upstream-sync] skills/datamol/references/workflow_patterns.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:36:30 +00:00
promptadmin da68568599 [upstream-sync] skills/datamol/references/core_workflows.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:36:22 +00:00
promptadmin a7a8142661 [upstream-sync] skills/database-lookup/references/database_selection_guide.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:36:14 +00:00
promptadmin 9465235545 [upstream-sync] skills/citation-management/references/search_strategies.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:36:06 +00:00
promptadmin d8cb618412 [upstream-sync] skills/citation-management/references/script_reference.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:35:58 +00:00
promptadmin 3ac3bf1d78 [upstream-sync] skills/citation-management/references/example_workflows.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:35:50 +00:00
promptadmin d45a3e0302 [upstream-sync] skills/citation-management/references/core_workflow.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:35:43 +00:00
promptadmin b77351202b [upstream-sync] skills/citation-management/references/best_practices.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:35:35 +00:00
promptadmin 92f6a54c07 [upstream-sync] skills/cellxgene-census/references/core_workflow_patterns.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:35:27 +00:00
promptadmin 82a1993d65 [upstream-sync] skills/bids/references/core_workflows.md from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:35:20 +00:00
promptadmin d2382f2d52 [upstream-sync] skills/benchling-integration/references/core_capabilities.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:35:13 +00:00
promptadmin 2ba58733e1 [upstream-sync] skills/analytical-method-validation/references/statistics.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:35:04 +00:00
promptadmin 60013b3f85 [upstream-sync] skills/analytical-method-validation/references/source-ledger.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:34:54 +00:00
promptadmin c401daf4a0 [upstream-sync] skills/analytical-method-validation/references/ich-q2r2.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:34:43 +00:00
promptadmin 4c78e0c776 [upstream-sync] skills/analytical-method-validation/references/ich-m10-bioanalytical.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:34:31 +00:00
promptadmin a954e37a6d [upstream-sync] skills/analytical-method-validation/references/framework-selection.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:34:20 +00:00
promptadmin 7ba26c1744 [upstream-sync] skills/analytical-method-validation/references/compendial-and-clsi.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:34:08 +00:00
promptadmin ab40c50748 [upstream-sync] skills/analytical-method-validation/assets/validation-report-template.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:33:55 +00:00
promptadmin d82de50b20 [upstream-sync] skills/analytical-method-validation/assets/validation-protocol-template.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:33:43 +00:00
promptadmin fd3de230ba [upstream-sync] skills/analytical-method-validation/SKILL.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:33:33 +00:00
promptadmin edd6c68982 [upstream-sync] docs/security-triage.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:33:23 +00:00
promptadmin 87c37191f6 [upstream-sync] docs/security-report.json from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:33:13 +00:00
promptadmin cb96c9edc3 [upstream-sync] CODE_OF_CONDUCT.md from K-Dense-AI/scientific-agent-skills@991bd993 [catalogue] 2026-08-08 15:33:01 +00:00
promptadmin 758dd72a1c [upstream-sync] CLAUDE.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:32:48 +00:00
promptadmin 49206d9ec7 [upstream-sync] AGENTS.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:32:36 +00:00
promptadmin 3d76dabac6 [upstream-sync] .github/workflows/skill-tests.yml from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:32:25 +00:00
promptadmin a337b88460 [upstream-sync] .github/workflows/skill-spec-validation.yml from K-Dense-AI/scientific-agent-skills@991bd993 [prompt] 2026-08-08 15:32:15 +00:00
promptadmin a03dc31233 [upstream-sync] .github/PULL_REQUEST_TEMPLATE.md from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:32:07 +00:00
promptadmin 4f4315cfce [upstream-sync] .github/ISSUE_TEMPLATE/skill_improvement.yml from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:31:59 +00:00
promptadmin 2bee12d321 [upstream-sync] .github/ISSUE_TEMPLATE/new_skill_request.yml from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:31:52 +00:00
promptadmin 14dd2afca6 [upstream-sync] .github/ISSUE_TEMPLATE/config.yml from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:31:44 +00:00
promptadmin 8953628eee [upstream-sync] .github/ISSUE_TEMPLATE/bug_report.yml from K-Dense-AI/scientific-agent-skills@991bd993 [unknown] 2026-08-08 15:31:36 +00:00