[Upstream sync] mims-harvard/ToolUniverse (github) — 463 added, 0 modified #9

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promptadmin merged 463 commits from upstream-sync/tooluniverse-20260626-e2520a-igwi into main 2026-06-27 00:16:35 +00:00

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promptadmin commented 2026-06-26 22:11:02 +00:00

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Upstream sync from mims-harvard/ToolUniverse (github)

Source: https://github.com/mims-harvard/ToolUniverse
Forge: github
Compare: initial...e2520a96

---

Scan summary

Category	Files
Prompt / Skill files	165
Catalogue / Reference files	298

Prompt files are stored under upstream/{owner}-{repo}/
Catalogue files are stored under upstream/{owner}-{repo}/catalogue/

---

Decision required

Option	Action
Accept	Merge this PR — changes ingested into PromptNotes
Reject	Close this PR — local version preserved unchanged
Modify	Edit files in this branch before merging

Backup rights: If the upstream repository is later deleted or made private,
the last accepted version in PromptNotes is retained under backup rights.

---

Files added (463)

• skills/README.md
• skills/create-tooluniverse-skill/CODE_TEMPLATES.md
• skills/create-tooluniverse-skill/OPTIMIZE_INTEGRATION.md
• skills/create-tooluniverse-skill/PACKAGING_TEMPLATE.md
• skills/create-tooluniverse-skill/PARAMETER_VERIFICATION.md
• skills/create-tooluniverse-skill/QUICKSTART_TEMPLATE.md
• skills/create-tooluniverse-skill/SKILL.md
• skills/create-tooluniverse-skill/SKILL_TEMPLATE.md
• skills/create-tooluniverse-skill/TESTING_GUIDE.md
• skills/create-tooluniverse-skill/VALIDATION_CHECKLIST.md
• skills/create-tooluniverse-skill/assets/skill_template/QUICK_START.md
• skills/create-tooluniverse-skill/assets/skill_template/SKILL.md
• skills/create-tooluniverse-skill/references/devtu_optimize_integration.md
• skills/create-tooluniverse-skill/references/implementation_agnostic_format.md
• skills/create-tooluniverse-skill/references/skill_standards_checklist.md
• skills/create-tooluniverse-skill/references/tool_testing_workflow.md
• skills/devtu-auto-discover-apis/SKILL.md
• skills/devtu-auto-discover-apis/references/tool-templates.md
• skills/devtu-auto-discover-apis/references/validation-guide.md
• skills/devtu-benchmark-harness/SKILL.md
• skills/devtu-benchmark-harness/evals/evals.json
• skills/devtu-benchmark-harness/references/benchmark-guide.md
• skills/devtu-code-optimization/SKILL.md
• skills/devtu-code-optimization/references/api-fixes.md
• skills/devtu-code-optimization/references/code-patterns.md
• skills/devtu-create-tool/SKILL.md
• skills/devtu-create-tool/references/advanced-patterns.md
• skills/devtu-create-tool/references/implementation-guide.md
• skills/devtu-create-tool/references/quick-reference.md
• skills/devtu-create-tool/references/testing-guide.md
• skills/devtu-create-tool/references/tool-improvement-checklist.md
• skills/devtu-create-tool/templates/api_tools_config.json
• skills/devtu-create-tool/templates/simple_tools_config.json
• skills/devtu-docs-quality/API_REFERENCE.md
• skills/devtu-docs-quality/DOCS_STRUCTURE.md
• skills/devtu-docs-quality/EXAMPLES.md
• skills/devtu-docs-quality/SKILL.md
• skills/devtu-docs-quality/SUMMARY.md
• skills/devtu-fix-tool/EXAMPLES.md
• skills/devtu-fix-tool/QUICK-REFERENCE.md
• … and 423 more

---

Auto-generated by PromptNotes upstream tracker v2 · 2026-06-26 22:10 UTC

## Upstream sync from `mims-harvard/ToolUniverse` (github) **Source:** https://github.com/mims-harvard/ToolUniverse **Forge:** github **Compare:** [initial...e2520a96](https://github.com/mims-harvard/ToolUniverse/compare/initial...e2520a96) --- ## Scan summary | Category | Files | |----------|-------| | Prompt / Skill files | 165 | | Catalogue / Reference files | 298 | > Prompt files are stored under `upstream/{owner}-{repo}/` > Catalogue files are stored under `upstream/{owner}-{repo}/catalogue/` --- ## Decision required | Option | Action | |--------|--------| | **Accept** | Merge this PR — changes ingested into PromptNotes | | **Reject** | Close this PR — local version preserved unchanged | | **Modify** | Edit files in this branch before merging | > **Backup rights:** If the upstream repository is later deleted or made private, > the last accepted version in PromptNotes is retained under backup rights. --- ## Files added (463) - `skills/README.md` - `skills/create-tooluniverse-skill/CODE_TEMPLATES.md` - `skills/create-tooluniverse-skill/OPTIMIZE_INTEGRATION.md` - `skills/create-tooluniverse-skill/PACKAGING_TEMPLATE.md` - `skills/create-tooluniverse-skill/PARAMETER_VERIFICATION.md` - `skills/create-tooluniverse-skill/QUICKSTART_TEMPLATE.md` - `skills/create-tooluniverse-skill/SKILL.md` - `skills/create-tooluniverse-skill/SKILL_TEMPLATE.md` - `skills/create-tooluniverse-skill/TESTING_GUIDE.md` - `skills/create-tooluniverse-skill/VALIDATION_CHECKLIST.md` - `skills/create-tooluniverse-skill/assets/skill_template/QUICK_START.md` - `skills/create-tooluniverse-skill/assets/skill_template/SKILL.md` - `skills/create-tooluniverse-skill/references/devtu_optimize_integration.md` - `skills/create-tooluniverse-skill/references/implementation_agnostic_format.md` - `skills/create-tooluniverse-skill/references/skill_standards_checklist.md` - `skills/create-tooluniverse-skill/references/tool_testing_workflow.md` - `skills/devtu-auto-discover-apis/SKILL.md` - `skills/devtu-auto-discover-apis/references/tool-templates.md` - `skills/devtu-auto-discover-apis/references/validation-guide.md` - `skills/devtu-benchmark-harness/SKILL.md` - `skills/devtu-benchmark-harness/evals/evals.json` - `skills/devtu-benchmark-harness/references/benchmark-guide.md` - `skills/devtu-code-optimization/SKILL.md` - `skills/devtu-code-optimization/references/api-fixes.md` - `skills/devtu-code-optimization/references/code-patterns.md` - `skills/devtu-create-tool/SKILL.md` - `skills/devtu-create-tool/references/advanced-patterns.md` - `skills/devtu-create-tool/references/implementation-guide.md` - `skills/devtu-create-tool/references/quick-reference.md` - `skills/devtu-create-tool/references/testing-guide.md` - `skills/devtu-create-tool/references/tool-improvement-checklist.md` - `skills/devtu-create-tool/templates/api_tools_config.json` - `skills/devtu-create-tool/templates/simple_tools_config.json` - `skills/devtu-docs-quality/API_REFERENCE.md` - `skills/devtu-docs-quality/DOCS_STRUCTURE.md` - `skills/devtu-docs-quality/EXAMPLES.md` - `skills/devtu-docs-quality/SKILL.md` - `skills/devtu-docs-quality/SUMMARY.md` - `skills/devtu-fix-tool/EXAMPLES.md` - `skills/devtu-fix-tool/QUICK-REFERENCE.md` - … and 423 more --- *Auto-generated by PromptNotes upstream tracker v2 · 2026-06-26 22:10 UTC*

promptadmin added 463 commits 2026-06-26 22:11:05 +00:00

[upstream-sync] skills/README.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 4a3910a681

[upstream-sync] skills/create-tooluniverse-skill/CODE_TEMPLATES.md from mims-harvard/ToolUniverse@e2520a96 [prompt] edddf915e3

[upstream-sync] skills/create-tooluniverse-skill/OPTIMIZE_INTEGRATION.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 0596205c5c

[upstream-sync] skills/create-tooluniverse-skill/PACKAGING_TEMPLATE.md from mims-harvard/ToolUniverse@e2520a96 [unknown] d2a5aeae46

[upstream-sync] skills/create-tooluniverse-skill/PARAMETER_VERIFICATION.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 9f3a1d065b

[upstream-sync] skills/create-tooluniverse-skill/QUICKSTART_TEMPLATE.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 44bb0c2cb2

[upstream-sync] skills/create-tooluniverse-skill/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 877f391cd6

[upstream-sync] skills/create-tooluniverse-skill/SKILL_TEMPLATE.md from mims-harvard/ToolUniverse@e2520a96 [skill] 799b2fc13c

[upstream-sync] skills/create-tooluniverse-skill/TESTING_GUIDE.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 69188a75e6

[upstream-sync] skills/create-tooluniverse-skill/VALIDATION_CHECKLIST.md from mims-harvard/ToolUniverse@e2520a96 [unknown] ff8218864b

[upstream-sync] skills/create-tooluniverse-skill/assets/skill_template/QUICK_START.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 606249fa96

[upstream-sync] skills/create-tooluniverse-skill/assets/skill_template/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [skill] 407b3a4529

[upstream-sync] skills/create-tooluniverse-skill/references/devtu_optimize_integration.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 646496b6d3

[upstream-sync] skills/create-tooluniverse-skill/references/implementation_agnostic_format.md from mims-harvard/ToolUniverse@e2520a96 [skill] 510103a118

[upstream-sync] skills/create-tooluniverse-skill/references/skill_standards_checklist.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 4fe50b928c

[upstream-sync] skills/create-tooluniverse-skill/references/tool_testing_workflow.md from mims-harvard/ToolUniverse@e2520a96 [prompt] a29a08cd0f

[upstream-sync] skills/devtu-auto-discover-apis/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 5b4aae76e3

[upstream-sync] skills/devtu-auto-discover-apis/references/tool-templates.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 41a462bc66

[upstream-sync] skills/devtu-auto-discover-apis/references/validation-guide.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 5b833cc15c

[upstream-sync] skills/devtu-benchmark-harness/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 30b6968b55

[upstream-sync] skills/devtu-benchmark-harness/evals/evals.json from mims-harvard/ToolUniverse@e2520a96 [unknown] e0eeb0f337

[upstream-sync] skills/devtu-benchmark-harness/references/benchmark-guide.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 12bf333cbf

[upstream-sync] skills/devtu-code-optimization/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt] ffcc0e80ba

[upstream-sync] skills/devtu-code-optimization/references/api-fixes.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 2d0223dca8

[upstream-sync] skills/devtu-code-optimization/references/code-patterns.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 8a2c17ce5c

[upstream-sync] skills/devtu-create-tool/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt] daddaf01a4

[upstream-sync] skills/devtu-create-tool/references/advanced-patterns.md from mims-harvard/ToolUniverse@e2520a96 [prompt] b18fa48553

[upstream-sync] skills/devtu-create-tool/references/implementation-guide.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 48d4cd9f31

[upstream-sync] skills/devtu-create-tool/references/quick-reference.md from mims-harvard/ToolUniverse@e2520a96 [prompt] e32ea7948f

[upstream-sync] skills/devtu-create-tool/references/testing-guide.md from mims-harvard/ToolUniverse@e2520a96 [unknown] ef199b1f15

[upstream-sync] skills/devtu-create-tool/references/tool-improvement-checklist.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 79a4f15be8

[upstream-sync] skills/devtu-create-tool/templates/api_tools_config.json from mims-harvard/ToolUniverse@e2520a96 [prompt] c12d8eec74

[upstream-sync] skills/devtu-create-tool/templates/simple_tools_config.json from mims-harvard/ToolUniverse@e2520a96 [prompt] e33754f393

[upstream-sync] skills/devtu-docs-quality/API_REFERENCE.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 0089f45e39

[upstream-sync] skills/devtu-docs-quality/DOCS_STRUCTURE.md from mims-harvard/ToolUniverse@e2520a96 [unknown] bdd52e13af

[upstream-sync] skills/devtu-docs-quality/EXAMPLES.md from mims-harvard/ToolUniverse@e2520a96 [unknown] ceab9113a9

[upstream-sync] skills/devtu-docs-quality/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 4bbe22e247

[upstream-sync] skills/devtu-docs-quality/SUMMARY.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 856e598e56

[upstream-sync] skills/devtu-fix-tool/EXAMPLES.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 218ebfd33a

[upstream-sync] skills/devtu-fix-tool/QUICK-REFERENCE.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 3ee3f4f471

[upstream-sync] skills/devtu-fix-tool/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt] e0acf93ebf

[upstream-sync] skills/devtu-fix-tool/unit-tests-reference.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 98358271b2

[upstream-sync] skills/devtu-github/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 0152e7ac0d

[upstream-sync] skills/devtu-github/instructions.md from mims-harvard/ToolUniverse@e2520a96 [prompt] c64ec03372

[upstream-sync] skills/devtu-github/skill.json from mims-harvard/ToolUniverse@e2520a96 [unknown] dc9a913a45

[upstream-sync] skills/devtu-optimize-descriptions/CHECKLIST.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 179a197a10

[upstream-sync] skills/devtu-optimize-descriptions/EXAMPLES.md from mims-harvard/ToolUniverse@e2520a96 [unknown] f36a48adf8

[upstream-sync] skills/devtu-optimize-descriptions/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [unknown] b6a3c9099c

[upstream-sync] skills/devtu-optimize-skills/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 4eadfa7a56

[upstream-sync] skills/devtu-optimize-skills/references/case-studies.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 457b1559dd

[upstream-sync] skills/devtu-optimize-skills/references/checklists.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 6851793a37

[upstream-sync] skills/devtu-optimize-skills/references/optimization-patterns.md from mims-harvard/ToolUniverse@e2520a96 [unknown] f04ebcff8a

[upstream-sync] skills/devtu-optimize-skills/references/testing-standards.md from mims-harvard/ToolUniverse@e2520a96 [unknown] f614394acf

[upstream-sync] skills/devtu-self-evolve/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt] cb2e01f53d

[upstream-sync] skills/devtu-self-evolve/references/bug-patterns.md from mims-harvard/ToolUniverse@e2520a96 [prompt] daabd031d8

[upstream-sync] skills/devtu-self-evolve/references/persona-template.md from mims-harvard/ToolUniverse@e2520a96 [prompt] cb013ae0e2

[upstream-sync] skills/setup-tooluniverse/API_KEYS_REFERENCE.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 8314e984f4

[upstream-sync] skills/setup-tooluniverse/CLAUDE_DESKTOP.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 5395400160

[upstream-sync] skills/setup-tooluniverse/EXAMPLES.md from mims-harvard/ToolUniverse@e2520a96 [unknown] fc69882174

[upstream-sync] skills/setup-tooluniverse/GITHUB_ISSUE.md from mims-harvard/ToolUniverse@e2520a96 [unknown] b386ee8279

[upstream-sync] skills/setup-tooluniverse/INSTALL.md from mims-harvard/ToolUniverse@e2520a96 [unknown] f4cfe45b63

[upstream-sync] skills/setup-tooluniverse/MCP_CONFIG.md from mims-harvard/ToolUniverse@e2520a96 [prompt] e8ebaae471

[upstream-sync] skills/setup-tooluniverse/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 4ac844474e

[upstream-sync] skills/setup-tooluniverse/SKILLS_CATALOG.md from mims-harvard/ToolUniverse@e2520a96 [unknown] aaedfccea3

[upstream-sync] skills/setup-tooluniverse/SKILL_SUMMARY.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 5286f466d8

[upstream-sync] skills/setup-tooluniverse/TRAE.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 3a942efbc1

[upstream-sync] skills/setup-tooluniverse/TROUBLESHOOTING.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 1b0138205f

[upstream-sync] skills/setup-tooluniverse/references/mcp-configs.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 03a4c7fda9

[upstream-sync] skills/tooluniverse-acmg-variant-classification/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] baf440fd95

[upstream-sync] skills/tooluniverse-admet-prediction/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 2219e83fc2

[upstream-sync] skills/tooluniverse-adverse-event-detection/PHASE_DETAILS.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 04918eff02

[upstream-sync] skills/tooluniverse-adverse-event-detection/QUICK_START.md from mims-harvard/ToolUniverse@e2520a96 [unknown] d2d36c2975

[upstream-sync] skills/tooluniverse-adverse-event-detection/REPORT_TEMPLATE.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 23760a71c0

[upstream-sync] skills/tooluniverse-adverse-event-detection/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 2760172a53

[upstream-sync] skills/tooluniverse-adverse-event-detection/TOOL_REFERENCE.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 743d2ef273

[upstream-sync] skills/tooluniverse-adverse-outcome-pathway/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 89edd0f3b5

[upstream-sync] skills/tooluniverse-aging-senescence/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 756d9d59ad

[upstream-sync] skills/tooluniverse-antibody-engineering/CHECKLISTS.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 453fe2ecb7

[upstream-sync] skills/tooluniverse-antibody-engineering/EXAMPLES.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 2a7c2d7a8e

[upstream-sync] skills/tooluniverse-antibody-engineering/MANUFACTURING.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 7af9fbd5c1

[upstream-sync] skills/tooluniverse-antibody-engineering/QUICK_START.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 4b36e1e374

[upstream-sync] skills/tooluniverse-antibody-engineering/REPORT_TEMPLATE.md from mims-harvard/ToolUniverse@e2520a96 [unknown] b0d6698908

[upstream-sync] skills/tooluniverse-antibody-engineering/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 6d2cecdf29

[upstream-sync] skills/tooluniverse-antibody-engineering/WORKFLOW_DETAILS.md from mims-harvard/ToolUniverse@e2520a96 [prompt] e90b016789

[upstream-sync] skills/tooluniverse-binder-discovery/CHECKLIST.md from mims-harvard/ToolUniverse@e2520a96 [unknown] ab4df925da

[upstream-sync] skills/tooluniverse-binder-discovery/EXAMPLES.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 7e20239130

[upstream-sync] skills/tooluniverse-binder-discovery/REPORT_TEMPLATE.md from mims-harvard/ToolUniverse@e2520a96 [unknown] d113f96517

[upstream-sync] skills/tooluniverse-binder-discovery/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt] c2e746782a

[upstream-sync] skills/tooluniverse-binder-discovery/TOOLS_REFERENCE.md from mims-harvard/ToolUniverse@e2520a96 [prompt] dac7490fcc

[upstream-sync] skills/tooluniverse-binder-discovery/WORKFLOW_DETAILS.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 9345d19a2b

[upstream-sync] skills/tooluniverse-cancer-classification/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 2edc8f1302

[upstream-sync] skills/tooluniverse-cancer-genomics-tcga/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt] d79a5f001a

[upstream-sync] skills/tooluniverse-cancer-variant-interpretation/ANALYSIS_DETAILS.md from mims-harvard/ToolUniverse@e2520a96 [prompt] e1ba53494a

[upstream-sync] skills/tooluniverse-cancer-variant-interpretation/EXAMPLES.md from mims-harvard/ToolUniverse@e2520a96 [prompt] db92728864

[upstream-sync] skills/tooluniverse-cancer-variant-interpretation/INPUT_PARSING.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 397ab1599a

[upstream-sync] skills/tooluniverse-cancer-variant-interpretation/QUICK_START.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 6ad99bc2ff

[upstream-sync] skills/tooluniverse-cancer-variant-interpretation/REPORT_TEMPLATE.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 923dbc4bb6

[upstream-sync] skills/tooluniverse-cancer-variant-interpretation/SCORING_TABLES.md from mims-harvard/ToolUniverse@e2520a96 [unknown] ad2ad12f06

[upstream-sync] skills/tooluniverse-cancer-variant-interpretation/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 8ce9d8d1d6

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[upstream-sync] skills/tooluniverse-cell-line-profiling/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [unknown] c5c8d69c74

[upstream-sync] skills/tooluniverse-chemical-compound-retrieval/CHECKLIST.md from mims-harvard/ToolUniverse@e2520a96 [unknown] fb4aae5e53

[upstream-sync] skills/tooluniverse-chemical-compound-retrieval/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 50d61bdbf1

[upstream-sync] skills/tooluniverse-chemical-compound-retrieval/examples.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 1f98fce92e

[upstream-sync] skills/tooluniverse-chemical-safety/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 3d0b41b5ab

[upstream-sync] skills/tooluniverse-chemical-safety/evidence-grading.md from mims-harvard/ToolUniverse@e2520a96 [unknown] d49dcc6133

[upstream-sync] skills/tooluniverse-chemical-safety/phase-details.md from mims-harvard/ToolUniverse@e2520a96 [unknown] e0d54529db

[upstream-sync] skills/tooluniverse-chemical-safety/phase-procedures-detailed.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] d162ee0d80

[upstream-sync] skills/tooluniverse-chemical-safety/report-templates.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 06ca0046cc

[upstream-sync] skills/tooluniverse-chemical-sourcing/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [unknown] c6dd8c7679

[upstream-sync] skills/tooluniverse-claude-code-plugin/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 0796db3563

[upstream-sync] skills/tooluniverse-clinical-data-integration/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 0f4b2b596c

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[upstream-sync] skills/tooluniverse-stem-cell-organoid/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 973de2ae2c

[upstream-sync] skills/tooluniverse-structural-proteomics/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 24d48ca849

[upstream-sync] skills/tooluniverse-structural-variant-analysis/ANALYSIS_PROCEDURES.md from mims-harvard/ToolUniverse@e2520a96 [prompt] ec758557b0

[upstream-sync] skills/tooluniverse-structural-variant-analysis/CLASSIFICATION_GUIDE.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 99a9a90100

[upstream-sync] skills/tooluniverse-structural-variant-analysis/EXAMPLES.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 0cca8cc59a

[upstream-sync] skills/tooluniverse-structural-variant-analysis/REPORT_TEMPLATE.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 7976b72ab3

[upstream-sync] skills/tooluniverse-structural-variant-analysis/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [unknown] cd42e222a7

[upstream-sync] skills/tooluniverse-systems-biology/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [skill] 94b1dd22d0

[upstream-sync] skills/tooluniverse-systems-biology/test1_genelist.md from mims-harvard/ToolUniverse@e2520a96 [unknown] c9346192db

[upstream-sync] skills/tooluniverse-systems-biology/test2_protein.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 8c1e2f3a5c

[upstream-sync] skills/tooluniverse-systems-biology/test3_keyword.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 058d8f3045

[upstream-sync] skills/tooluniverse-systems-biology/test4_combined.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 0d0f678bdf

[upstream-sync] skills/tooluniverse-target-research/EVIDENCE_GRADING.md from mims-harvard/ToolUniverse@e2520a96 [unknown] a521cd5152

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[upstream-sync] skills/tooluniverse-target-research/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 52641e5499

[upstream-sync] skills/tooluniverse-toxicology/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [skill] 677c20b584

[upstream-sync] skills/tooluniverse-vaccine-design/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 7797914d02

[upstream-sync] skills/tooluniverse-variant-analysis/QUICK_START.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] 989badc4cc

[upstream-sync] skills/tooluniverse-variant-analysis/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [catalogue] b30dce884a

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[upstream-sync] skills/tooluniverse-variant-analysis/references/mutation_classification_guide.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 9a293cc9b7

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[upstream-sync] skills/tooluniverse-variant-analysis/references/vcf_filtering.md from mims-harvard/ToolUniverse@e2520a96 [unknown] b730730e3d

[upstream-sync] skills/tooluniverse-variant-functional-annotation/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [unknown] ddfd17722e

[upstream-sync] skills/tooluniverse-variant-interpretation/ACMG_CLASSIFICATION.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 89b2d4930c

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[upstream-sync] skills/tooluniverse-variant-interpretation/CODE_PATTERNS.md from mims-harvard/ToolUniverse@e2520a96 [prompt] d7fe9f6cb5

[upstream-sync] skills/tooluniverse-variant-interpretation/EXAMPLES.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 541b1513ff

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[upstream-sync] skills/tooluniverse-variant-interpretation/TOOLS_REFERENCE.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 83cc490f7b

[upstream-sync] skills/tooluniverse-variant-predictor-dms-validation/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 9f82fed67e

[upstream-sync] skills/tooluniverse-variant-to-mechanism/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [prompt] 5246da9db3

[upstream-sync] skills/tooluniverse/CHECKLIST.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 348c17f439

[upstream-sync] skills/tooluniverse/REFERENCE.md from mims-harvard/ToolUniverse@e2520a96 [unknown] 5607e03ff5

[upstream-sync] skills/tooluniverse/SKILL.md from mims-harvard/ToolUniverse@e2520a96 [skill] 56b5df3887

[upstream-sync] skills/tooluniverse/references/general-strategies.md from mims-harvard/ToolUniverse@e2520a96 [unknown] e49dd04674

promptadmin merged commit fa2969978b into main 2026-06-27 00:16:35 +00:00

promptadmin referenced this issue from a commit 2026-06-27 00:16:39 +00:00

Merge pull request '[Upstream sync] mims-harvard/ToolUniverse (github) — 463 added, 0 modified' (#9) from upstream-sync/tooluniverse-20260626-e2520a-igwi into main

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Reference: promptadmin/drug-discovery-prompts#9