51 lines
1.2 KiB
Markdown
51 lines
1.2 KiB
Markdown
---
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title: "EMDB (Electron Microscopy Data Bank)"
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task: ""
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lineage_type: import
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upstream_source: https://github.com/K-Dense-AI/scientific-agent-skills/blob/9c9bd2e9/skills/database-lookup/references/emdb.md
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upstream_sha: 9c9bd2e9
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imported_at: 2026-06-26
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prompt_class: prompt
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upstream_changes: accepted
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author: upstream
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validated: false
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---
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# EMDB (Electron Microscopy Data Bank)
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## Base URL
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```
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https://www.ebi.ac.uk/emdb/api/
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```
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## Auth
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No auth required.
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## Key Endpoints
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| Endpoint | Description |
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|----------|-------------|
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| `/entry/{emdb_id}` | Full entry metadata (e.g. EMD-1234) |
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| `/entry/map/{emdb_id}` | Map/volume metadata |
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| `/entry/experiment/{emdb_id}` | Experimental details |
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| `/entry/fitted/{emdb_id}` | Fitted PDB models |
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| `/search/{query}?rows={n}` | Search entries by keyword |
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## Example Calls
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```
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# Entry metadata
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https://www.ebi.ac.uk/emdb/api/entry/EMD-1234
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# Search for ribosome entries
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https://www.ebi.ac.uk/emdb/api/search/ribosome?rows=5
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# Experimental details
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https://www.ebi.ac.uk/emdb/api/entry/experiment/EMD-1234
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```
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## Response Format
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JSON. Search includes pagination and matching entry array.
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## Rate Limits
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EBI fair-use policy. Map files (MRC/CCP4) available via FTP for bulk access.
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