drug-discovery-prompts/upstream/K-Dense-AI-scientific-agent-skills/skills/database-lookup/references/mousemine.md

title, task, lineage_type, upstream_source, upstream_sha, imported_at, prompt_class, upstream_changes, author, validated

title	task	lineage_type	upstream_source	upstream_sha	imported_at	prompt_class	upstream_changes	author	validated
MouseMine (Mouse Genome Informatics, InterMine-based)		import	https://github.com/K-Dense-AI/scientific-agent-skills/blob/9c9bd2e9/skills/database-lookup/references/mousemine.md	9c9bd2e9	2026-06-26	prompt	accepted	upstream	false

MouseMine (Mouse Genome Informatics, InterMine-based)

Base URL

https://www.mousemine.org/mousemine/service

Auth

No auth for most queries. Free account token needed for saved lists.

Key Endpoints

Endpoint	Description
/search?q={query}&format=json	Keyword search across all objects
/template/results?name={template}&op1=LOOKUP&value1={value}&format=json	Run pre-built template query
/query/results (POST)	Run custom PathQuery (XML)
/model	Retrieve data model

Example Calls

# Keyword search for Brca1
https://www.mousemine.org/mousemine/service/search?q=Brca1&format=json

# Template: Gene → GO terms
https://www.mousemine.org/mousemine/service/template/results?name=Gene_GO&op1=LOOKUP&value1=Pax6&format=json

Custom Query (POST)

POST /query/results
Content-Type: application/x-www-form-urlencoded
query=<query model="genomic" view="Gene.symbol Gene.name" sortOrder="Gene.symbol asc"><constraint path="Gene.organism.name" op="=" value="Mus musculus"/></query>&format=json

Response Format

JSON: {"results": [...], "statusCode": 200}. Also supports XML, TSV, CSV via format param.

Rate Limits

No published limits. Be reasonable.