54 lines
1.6 KiB
Markdown
54 lines
1.6 KiB
Markdown
---
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title: "MouseMine (Mouse Genome Informatics, InterMine-based)"
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task: ""
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lineage_type: import
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upstream_source: https://github.com/K-Dense-AI/scientific-agent-skills/blob/9c9bd2e9/skills/database-lookup/references/mousemine.md
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upstream_sha: 9c9bd2e9
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imported_at: 2026-06-26
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prompt_class: prompt
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upstream_changes: accepted
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author: upstream
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validated: false
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---
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# MouseMine (Mouse Genome Informatics, InterMine-based)
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## Base URL
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```
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https://www.mousemine.org/mousemine/service
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```
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## Auth
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No auth for most queries. Free account token needed for saved lists.
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## Key Endpoints
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| Endpoint | Description |
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|----------|-------------|
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| `/search?q={query}&format=json` | Keyword search across all objects |
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| `/template/results?name={template}&op1=LOOKUP&value1={value}&format=json` | Run pre-built template query |
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| `/query/results` (POST) | Run custom PathQuery (XML) |
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| `/model` | Retrieve data model |
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## Example Calls
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```
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# Keyword search for Brca1
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https://www.mousemine.org/mousemine/service/search?q=Brca1&format=json
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# Template: Gene → GO terms
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https://www.mousemine.org/mousemine/service/template/results?name=Gene_GO&op1=LOOKUP&value1=Pax6&format=json
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```
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## Custom Query (POST)
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```
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POST /query/results
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Content-Type: application/x-www-form-urlencoded
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query=<query model="genomic" view="Gene.symbol Gene.name" sortOrder="Gene.symbol asc"><constraint path="Gene.organism.name" op="=" value="Mus musculus"/></query>&format=json
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```
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## Response Format
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JSON: `{"results": [...], "statusCode": 200}`. Also supports XML, TSV, CSV via `format` param.
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## Rate Limits
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No published limits. Be reasonable.
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