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969c13a5c3 |
@@ -2,9 +2,9 @@
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title: "Readme"
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task: ""
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lineage_type: import
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upstream_source: https://github.com/ai-boost/awesome-ai-for-science/blob/5c0bca43/README.md
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upstream_sha: 5c0bca43
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imported_at: 2026-08-26
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upstream_source: https://github.com/ai-boost/awesome-ai-for-science/blob/d57c2d50/README.md
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upstream_sha: d57c2d50
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imported_at: 2026-09-01
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prompt_class: catalogue
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upstream_changes: accepted
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author: upstream
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@@ -207,6 +207,7 @@ validated: false
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- [Jupyter AI (JupyterLab Extension)](https://github.com/jupyterlab/jupyter-ai) - Official Jupyter extension with `%%ai` magic commands and sidebar chat assistant, connecting multiple model providers and local inference
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- [Notebook Intelligence (NBI)](https://github.com/notebook-intelligence/notebook-intelligence) - AI coding assistant for JupyterLab with agent mode, supporting arbitrary LLM providers (2025+)
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- [Google Colab AI Features](https://colab.research.google.com/) - Integrated AI assistance for data science and research notebooks
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- [OpenAI4S](https://github.com/PKU-YuanGroup/OpenAI4S) - Open-source hybrid scientific research agent and workbench replicating Claude Science, combining JSON tool orchestration with persistent Python/R Code-as-Action kernels, 604 bundled science skills, MCP connectors, sandboxed local execution, and multi-provider LLM support for end-to-end scientific workflows (PKU–YuanKong Intelligence, 377+ stars, MIT License, 2026)
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- [OpenBioMed](https://github.com/PharMolix/OpenBioMed) - Open-source biomedical AI platform integrating multimodal foundation models (BioMedGPT, PharmolixFM, LangCell) with agentic workflows and 45+ Claude Code skills for drug discovery, protein engineering, and single-cell omics analysis (PharMolix & Tsinghua AIR, 1K+ stars, 2023-2026)
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- [AutoR](https://github.com/AutoX-AI-Labs/AutoR) - Human-centered research OS with terminal-first harness and local browser Studio, turning research work into reproducible artifact-backed runs through a 9-stage workflow with human approval gates, resume/rollback controls, and venue-aware manuscript packaging (1K+ stars, 2026)
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- [ScholarAIO](https://github.com/ZimoLiao/scholaraio) - Agent-agnostic research infrastructure providing AI agents with a structured scientific workspace for deep PDF parsing, hybrid semantic/keyword literature search, citation-graph analysis, topic discovery, and academic writing workflows; natively integrates with Claude Code, Codex, Cursor, Cline, and AgentSkills.io (530+ stars, MIT License, 2026)
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@@ -809,6 +810,7 @@ validated: false
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- [FarmVibes.AI](https://github.com/microsoft/farmvibes-ai) - Multi-modal geospatial ML platform for agriculture and sustainability, fusing satellite imagery (RGB, SAR, multispectral), drone imagery, weather data, and sensor data for crop identification, carbon footprint estimation, and microclimate prediction (Microsoft Research, MIT License)
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- [PlantCV](https://github.com/danforthcenter/plantcv) - Open-source image analysis toolkit for high-throughput plant phenotyping, extracting morphological, color, and texture traits from RGB, hyperspectral, and thermal imagery with modular Python workflows for crop improvement, stress detection, and plant biology research (Donald Danforth Plant Science Center, 795+ stars, MPL-2.0)
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- [Virdis](https://github.com/Thanas-R/Virdis) - Satellite-powered agricultural and land analytics platform combining Sentinel-2 imagery, Google Earth Engine processing, real-time weather data, soil science databases, and AI-driven crop planning into a unified web dashboard (145+ stars, AGPL-3.0, 2026)
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- [Agribound](https://github.com/montimaj/agribound) - AI-powered field boundary delineation toolkit combining satellite foundation models, embeddings, and global training data for accurate agricultural parcel/field boundary mapping, with Google Earth Engine integration and PyPI distribution (84+ stars, Apache 2.0, 2026)
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#### Ecological Modeling
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- [BioSimulators](https://github.com/biosimulators/Biosimulators) - Biological simulation tools
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