92 lines
2.7 KiB
YAML
92 lines
2.7 KiB
YAML
---
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title: "Provenance-backed database and API enrichment batch."
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task: ""
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lineage_type: import
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upstream_source: https://github.com/inoue0426/awesome-computational-biology/blob/7a064bf0/data/enrichment.database-api-v1.yml
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upstream_sha: 7a064bf0
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imported_at: 2026-08-08
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prompt_class: catalogue
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upstream_changes: accepted
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author: upstream
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validated: false
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---
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# Provenance-backed database and API enrichment batch.
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resources:
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chembl_web_services:
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entities: [molecule, protein]
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modalities: [chemical-structure]
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documentation: https://www.ebi.ac.uk/chembl/api/data/docs
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last_checked: 2026-08-08
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metadata_sources:
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- https://www.ebi.ac.uk/chembl/api/data/docs
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clinicaltrials_gov_api:
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entities: [disease, drug]
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modalities: [clinical]
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documentation: https://clinicaltrials.gov/data-api/api
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last_checked: 2026-08-08
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metadata_sources:
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- https://clinicaltrials.gov/data-api/api
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ensembl_rest_api:
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entities: [gene, genome, transcript, variant]
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modalities: [genomics]
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documentation: https://rest.ensembl.org/
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last_checked: 2026-08-08
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metadata_sources:
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- https://rest.ensembl.org/
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kegg_rest_api:
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entities: [compound, gene, pathway]
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documentation: https://www.kegg.jp/kegg/rest/keggapi.html
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last_checked: 2026-08-08
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metadata_sources:
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- https://www.kegg.jp/kegg/rest/keggapi.html
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ncbi_e_utilities:
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entities: [gene, genome, protein, transcript, variant]
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modalities: [genomics, transcriptomics]
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documentation: https://www.ncbi.nlm.nih.gov/books/NBK25501/
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last_checked: 2026-08-08
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metadata_sources:
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- https://www.ncbi.nlm.nih.gov/books/NBK25501/
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open_targets_platform_api:
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entities: [disease, drug, gene, variant]
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modalities: [genomics, knowledge-graph]
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documentation: https://platform.opentargets.org/api
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last_checked: 2026-08-08
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metadata_sources:
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- https://platform.opentargets.org/api
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pubmed_e_utilities_esearch_efetch:
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documentation: https://www.ncbi.nlm.nih.gov/books/NBK25501/
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last_checked: 2026-08-08
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metadata_sources:
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- https://www.ncbi.nlm.nih.gov/books/NBK25501/
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uniprot_rest_api:
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entities: [protein]
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modalities: [protein-sequence, proteomics]
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documentation: https://www.uniprot.org/help/api
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last_checked: 2026-08-08
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metadata_sources:
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- https://www.uniprot.org/help/api
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drugbank:
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entities: [disease, drug, protein]
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modalities: [chemical-structure]
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last_checked: 2026-08-08
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metadata_sources:
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- https://go.drugbank.com/
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string:
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entities: [protein]
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modalities: [knowledge-graph, proteomics]
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documentation: https://string-db.org/help/api/
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last_checked: 2026-08-08
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metadata_sources:
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- https://string-db.org/
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- https://string-db.org/help/api/
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